G143790


Basic Information

Item Value
gene id G143790
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23623814 ~ 23625655 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194618
TATGTTTATACGATTATAGATGATTTCAAATTCTAAGTGCTGTATAATCTGTTATTCAGGCACTGTTTGGACCCACTTGTGCAGACCTTTGCTGGTTCTTGAATCTATTAAAATAGTAGTACATTTAAGCCGTGCCCAGGTCGTTACTGCATGGCAGGAGCAGTTTCCACTGAACCTTCGCCACAACAACTGCTGAAAAAGTGTTTACTAGGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194618 True 215 lncRNA 0.40 2 23623814 23625655

Neighbor

gene id symbol gene type direction distance location
LOC103023765 NA coding upstream 181724 23435594 ~ 23442090 (+)
emilin2 NA coding upstream 333189 23255677 ~ 23290625 (+)
smchd1 smchd1 coding upstream 373068 23190464 ~ 23250746 (+)
trnaa-cgc_2 NA coding upstream 558456 23065287 ~ 23065358 (+)
trnat-cgu NA coding upstream 558715 23065028 ~ 23065099 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding downstream 84853 23710508 ~ 23734928 (+)
LOC103035300 cacnb2,LOC102289395 coding downstream 154597 23780252 ~ 23905504 (+)
arl5b arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092 coding downstream 320448 23946103 ~ 23971572 (+)
LOC103039837 nfib coding downstream 479680 24105335 ~ 24140202 (+)
LOC111194343 NA coding downstream 990456 24616111 ~ 24648725 (+)
LOC111194249 NA non-coding upstream 73261 23549322 ~ 23550553 (+)
LOC111194209 NA non-coding upstream 95450 23526023 ~ 23528364 (+)
LOC111194207 NA non-coding upstream 97879 23523972 ~ 23525935 (+)
LOC103022725 NA non-coding upstream 103310 23518321 ~ 23520504 (+)
LOC111194184 NA non-coding upstream 166508 23455773 ~ 23457306 (+)
G143793 LOC107571931 non-coding downstream 45201 23670856 ~ 23671871 (+)
G143841 NA non-coding downstream 167284 23792939 ~ 23793178 (+)
G143867 NA non-coding downstream 336526 23962181 ~ 24020510 (+)
G143919 NA non-coding downstream 419610 24045265 ~ 24046442 (+)
G143928 NA non-coding downstream 441291 24066946 ~ 24071896 (+)
LOC111194174 NA other upstream 216920 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 228574 23385168 ~ 23395240 (+)
G143324 NA other upstream 1013367 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 1715500 21811291 ~ 21908314 (+)
G143122 LOC108436138 other upstream 1977109 21645905 ~ 21646705 (+)
G143836 NA other downstream 202293 23827948 ~ 23916082 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 810724 24436379 ~ 24602402 (+)
G144017 NA other downstream 1081428 24707083 ~ 24711533 (+)
LOC111188189 NA other downstream 1231117 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 1267337 24892992 ~ 24894553 (+)

Expression


Co-expression Network