G143919


Basic Information

Item Value
gene id G143919
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24045265 ~ 24046442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU194766
CCTGCATCAGGGCAACGTTCCTCGTTGAACTGTAAAGTAAGGTCAGTTATAACTGTGAGATATTGTCAACAGCAAGAGTCGACAGAGTTCATCCCCAGTGGAACTAACACAGTTGGGCTGAAGGAGAACTCTCTTTTAACTATATGCTTGCTGCTATACCGAGAGAGATGCTGGCTAGTGAGCTGCGGAGCTCTGCTACTGCTGAACCGAGTGAAGGTGCgtgagctgtgctgctgctgaaccgagtgagctgcgtgagctgtgctgctgctgaaccgAGAGAGAGCTGAGAAGCTGAGTTGCACTGATTAAAGCAGCTATTACTGGATCCACAATACAACTGAGGTACTCAGTAactacaggtacacacacacacacatttttgttcAGCTCCCTGAGCGAAGAGGCCAGTTTCTGTTTTCTTGGGCCACTACGAACCCCAGCTACGTCCAGGCCtgcaacttttgtttttttatttaatttaatgccgGCTCAGACAGTTCTATTAAGGGCCCATAGAGTTTTATTTTTGAGTTTACTAAGTGCTAAAACTGTGATTGCATTACAGTGTTTGTTGTGACATTTATATTGTCTAATTCTGAGGTTTAAGTTGAGAGCTTAAAACTATACTGATTGTAATTGTAAACTCCTTGAaccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU194766 True 659 lncRNA 0.44 2 24045265 24046442

Neighbor

gene id symbol gene type direction distance location
arl5b arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092 coding upstream 73693 23946103 ~ 23971572 (+)
LOC103035300 cacnb2,LOC102289395 coding upstream 139761 23780252 ~ 23905504 (+)
LOC103024717 LOC108436153,LOC108267195,LOC107730122,LOC559800,LOC107698664,LOC107559837 coding upstream 310337 23710508 ~ 23734928 (+)
LOC103024399 pde5a,pde5ab coding upstream 381218 23572803 ~ 23664047 (+)
LOC103023765 NA coding upstream 603175 23435594 ~ 23442090 (+)
LOC103039837 nfib coding downstream 58893 24105335 ~ 24140202 (+)
LOC111194343 NA coding downstream 569669 24616111 ~ 24648725 (+)
ddit4l ddit4l coding downstream 610971 24657413 ~ 24661107 (+)
LOC103038819 H2AFZ,h2afvb,LOC103038819,LOC105895420,LOC102200939,LOC107706756 coding downstream 639823 24686265 ~ 24689586 (+)
gps2 gps2,LOC106608669 coding downstream 646660 24693102 ~ 24704428 (+)
G143867 NA non-coding upstream 24755 23962181 ~ 24020510 (+)
G143841 NA non-coding upstream 252087 23792939 ~ 23793178 (+)
G143793 LOC107571931 non-coding upstream 373394 23670856 ~ 23671871 (+)
G143790 NA non-coding upstream 419610 23623814 ~ 23625655 (+)
LOC111194249 NA non-coding upstream 494712 23549322 ~ 23550553 (+)
G143928 NA non-coding downstream 20504 24066946 ~ 24071896 (+)
G143964 NA non-coding downstream 143192 24189634 ~ 24189882 (+)
G143973 NA non-coding downstream 235592 24282034 ~ 24283150 (+)
G144000 NA non-coding downstream 381620 24428062 ~ 24428498 (+)
G144014 NA non-coding downstream 643353 24689795 ~ 24690175 (+)
G143836 NA other upstream 129183 23827948 ~ 23916082 (+)
LOC111194174 NA other upstream 638371 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 650025 23385168 ~ 23395240 (+)
G143324 NA other upstream 1434818 22535685 ~ 22610447 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other upstream 2136951 21811291 ~ 21908314 (+)
ppp3ca ppp3ca,LOC103369319 other downstream 389937 24436379 ~ 24602402 (+)
G144017 NA other downstream 660641 24707083 ~ 24711533 (+)
LOC111188189 NA other downstream 810330 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 846550 24892992 ~ 24894553 (+)
G144146 men1,LOC107660721 other downstream 952331 24998773 ~ 25004171 (+)

Expression


Co-expression Network