G144270 (peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255)


Basic Information

Item Value
gene id G144270
gene name peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25375998 ~ 25378765 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195235
ATTCCTCAACACAGCGCACAGTAGCTTTCACTTGTGTAAGCACGGTTCACACGGTGCACAACAGTTTAGTCCATTCAGCCCAGTTCTCCCCAGTCCTGGTCTTCGGGAACCCGCCTACACTCtgcacatttttgtgttttccctGCTGTAGCACACCAGAGCCAGAGAAATGAGGTGCTTTTAACCCTTAGAATTATTTACTTACCGCCAGCAATTACAAAAGCATGGTGCAATTCAATATGAATTAATTCTCACTTGTAGCTCATTGACAGAGAGAGGAATTCTGATAGAAGAATCTAAACGTTCAGTCAACACCACATTTATATCTGGAAGCAGAAGAAGAGGAGACACACCGAGcagccattacattaaaaacaacgCATTAATATTGTGTAGGGTCATTTTGAGACAGAAAATACTCCCAAAGCTCCTCAATCCCACCAAGGCCTCAACTCAATAGACTCCACAAGACCAAGACCTTTAAAGGTGTTTTGTTTGTATCTGGCACCAAGTCGTTgtagcagcagatcctttagGTCCTGTAAGTTGTGAGATGGGCCTctcaaaatattagaatatcattgaaaagatactttatttctataattcagttcaaaatgtgaaactcatattatatagatgtattaaacacagagtgatctatttttttatatctattttattattgatgattatggcttacagccaatgaaaagccaaaaatcagtgtatcagaaaatgaTATAAGATcaactggtacttttgtcagtgtcaagtcctgctggaaaataaaatccacaaactcataaaagttgtcagcagtgtTCTatcggaaaatcttacagcacttcatgctttcctctgctaatttcattttccagcaggacttggcaaactGCCAAGAAAAGAAAgtacactgcagaaagtaccaattgatccagattttagtgttttaattggctgtaagccataatcatcaacaataaaagacataCAAGCTTTaaatagatcaatctgtgtgtaatacattttttatgagttttacatttttaaactgaattaccgaaaaaaaaaaaaaattccccccCTTGCAGTACCTCTGCAGTCCACTGTGTCACGTATGGTGCTGAAAGTGCTCCTGTTTCTCCCACATAGAAGATCTAAACGCTCAATCAATACTACATTTATATGTGGAAGTAGAAGGAGAGGAGACACACTGAGCGGCCAGTACATTAAAAGCACTGCACTAATAGACCTTTAAAGGTGTTTtgtggtatctggcaccaagacGTTGGTTgtagcagcagatcctttagGTAAGATcttgtaagttgtgaggtgggcCTCCATGGATCACATCACTGAGCCTAGGGGTGCCCAAAACTTCCTTTGTCCTTCCTTTGACCTGATGACCTTGATGTTCTGAAGATCTTCTGACCCAATCATCTAGCAATCACAACAATCTGGCTCTGGTCAAATGGTCTCAGATCCTTTTGCTTAAGCTTTCGTTCCTTCTGCTTCCAACACATCGACTTCAGGAACTGAATTCTCTGAATTTTCTGCCTACTACAACTACTATATTAGAACAATTCAGAGTTAGAATCAGTGTTATTCATTTCAGCTGTCagctgttttaatgttatggctgattggtgcaTCTTGTGTGTTTTGAATCCAattaaaagaaagtaaaagagtGCTCTAGTTTTGCAGAAGGATAGGCAGAAAGATAAATCATCCTTTATAGTTTTGCcacattttgttttgtgtgtcaTTTCATGGCAAAACAACTATTAAAGAATTAAAGTCAGAAGTGTAGACTCAAGAAAGtatagaaacagaaagaaatgtAATTACGTAATTATAGTCAGATAGTACAGCAAACGAAAGTAAAAACTCTTCTAACTTTTCTTTTCTAAGGGTTAATTGACGTGTTAATGAGGTGAATCGAGTGTGCTAGATAAAGGGACAACGCAACGCAAGTGTGCAAAGCATGGGGTCTCTGAGGCTCAGGCTGGGGAACTACTCCGTCCTATTCATCCCGAACTCAACAGTCCAATCAGCAGTCCTCGTCTTTCTCACAGTCATTCTCTGGAGCGTGCAGGGTGGGCTCTCTCAGTCGACAGGCCCCTGGAAGATGAGTTTGACGTGGCCGTGCTCGCCGGTCAGCCACGTGCCGCAGAACGGGCAGGCCGCGTGGAAGGCGTGTGTTCCGTGGGGCAGCGGGATCTGGCTCCACCCCTGCACCGTCTTTTCCGAGCACACGTGGCCGCAGGGGCAGAAGGCGTGGGTGGGGGGCCCGGCGTCCAGGTACAGGCCGCCCTCGCAGCCCAGCCACAGGGGCACGTAGGGCCCCACCCTCCGGCACATGGGGCACTCGCGGTCCCCCGTGCTGGCTGGGGCGGTGCCTCCGCTTCCGGCTCCGCCCCCCACCGCAGAAGACCCCGCCCCTTTTTCCTTTCGGAAGCCCCAGTTGTGGTATCCGTGGACGTGGCCGCAGTTCATGTAGACCCAGGGCTGCTTCTTGTCGACGGTGGCGCGCTGGGCCAGGCTGGGGAACGCCAGCGTGTTGAAGCCCACGGGACACTGCGGCCGCGCCGCGTTCAGCTCCTGCCGCAGAGACTCCAGCTGCTTCAGCGTGGGGGTCCGCCGCAGCCCGCCAGGGGTCCGCCACAGGAGCGTGGCCCCACAGAGGTCGATCAGAGAGCCGTCCTGCAGCATGTTCGACTCGTTCTCCACC

Function

symbol description
peli3 Predicted to enable ubiquitin protein ligase activity. Predicted to act upstream of or within protein polyubiquitination and regulation of Toll signaling pathway. Orthologous to human PELI3 (pellino E3 ubiquitin protein ligase family member 3).

NR:

description
E3 ubiquitin-protein ligase pellino homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195235 True 2740 TUCP 0.46 2 25375998 25378765

Neighbor

gene id symbol gene type direction distance location
LOC103027853 rab1ba,LOC103027853,LOC100695098,LOC107679256,LOC105022126,LOC103373258,LOC106602974,LOC101478491 coding upstream 7512 25354818 ~ 25368486 (+)
LOC103046088 NA coding upstream 22856 25331275 ~ 25353142 (+)
LOC103028801 NA coding upstream 51475 25243906 ~ 25324523 (+)
taf6l taf6l,LOC107731936,LOC107709373 coding upstream 158089 25210589 ~ 25217909 (+)
LOC103030689 LOC103030689,LOC108440851,LOC108268299 coding upstream 165910 25207657 ~ 25210088 (+)
rce1 rce1,LOC107683501,LOC107731886,LOC107710076,LOC107679240 coding downstream 55805 25434570 ~ 25444547 (+)
LOC103047430 NA coding downstream 238560 25617325 ~ 25621063 (+)
LOC103042207 NA coding downstream 294468 25673233 ~ 25676372 (+)
saxo1 NA coding downstream 423154 25801919 ~ 25804385 (+)
col25a1 col25a1,LOC102793499 coding downstream 737691 26116456 ~ 26444978 (+)
G144174 NA non-coding upstream 146861 25227323 ~ 25229137 (+)
G144170 NA non-coding upstream 238512 25136738 ~ 25137486 (+)
G144169 NA non-coding upstream 247314 25128294 ~ 25128684 (+)
G144164 ecsit non-coding upstream 288515 25082638 ~ 25087483 (+)
G144160 NA non-coding upstream 295661 25076296 ~ 25080337 (+)
G144278 NA non-coding downstream 9332 25388097 ~ 25401731 (+)
G144276 NA non-coding downstream 66129 25444894 ~ 25446699 (+)
G144292 NA non-coding downstream 124694 25503459 ~ 25503798 (+)
G144293 NA non-coding downstream 125120 25503885 ~ 25504135 (+)
G144350 NA non-coding downstream 322414 25701179 ~ 25701674 (+)
G144146 men1,LOC107660721 other upstream 371827 24998773 ~ 25004171 (+)
LOC111194253 NA other upstream 481445 24892992 ~ 24894553 (+)
LOC111188189 NA other upstream 499261 24856772 ~ 24876737 (+)
G144017 NA other upstream 664465 24707083 ~ 24711533 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 773596 24436379 ~ 24602402 (+)
G144290 NA other downstream 93358 25472123 ~ 25474694 (+)
G144333 NA other downstream 274241 25653006 ~ 25654250 (+)
G144372 NA other downstream 407972 25786737 ~ 25788842 (+)
G144584 NA other downstream 1372070 26750835 ~ 26754442 (+)
G144613 NA other downstream 1428951 26807716 ~ 26812127 (+)

Expression


Co-expression Network