LOC111194346


Basic Information

Item Value
gene id LOC111194346
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25975071 ~ 25985891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195402
tagtcTTGTCACTTCTAGTTCATGCTTGTTTTCGTTCTggcttttcattatttaaaaaaaccctatccatataaatctctccatccagacagAGTGAACATTAGCCACTTaccgcgctagctctttcgcctttcagagACGCTGAACGGTTCCAGTAAATGCTCCCtgcagaagcagaagaaaagAAGGGACCACCTTTCCAAAAGGGTGCAATTCGATTCCAGGCACAATGCTGATGCCTTGTTCTCCCTCACCTCCTTGGTTGGAGTTTGGATGCCCAGGGGTTTGTCTCTTCCATATACGATAGGATGCATCAAGacctgggccgatgacgggaCCTACGCCAAAGATTTTATCTAGAAAACATAACCTCTTTACaatatacatgtatttttgttcaacattaaatatgtaaactaac
>TU195403
ctcatttgtttctgtttatgcTCTGTGCAGACGCTGAACGGTTCCAGTAAATGCTCCCtgcagaagcagaagaaaagAAGGGACCACCTTTCCAAAAGGGTGCAATTCGATTCCAGGCACAATGCTGATGCCTTGTTCTCCCTCACCTCCTTGGTTGGAGTTTGGATGCCCAGGGGTTTGTCTCTTCCATATACGATAGGATGCATCAAGacctgggccgatgacgggaCCTACGCCAAAGATTTTATCTAGAAAACATAACCTCTTTACaatatacatgtatttttgttcaacattaaatatgtaaactaac
>XR_002651032.1
CTAGTTCATGCTTGTTTTCGTTCTggcttttcattatttaaaaaaaccctatccatataaatctctccatccagacagAGTGAACATTAGCCACTTaccgcgctagctctttcgcctttcagagACGCTGAACGGTTCCAGTAAATGCTCCCtgcagaagcagaagaaaagAAGGGACCACCTTTCCAAAAGGGTGCAATTCGATTCCAGGCACAATGCTGATGCCTTGTTCTCCCTCACCTCCTTGGTTGGAGTTTGGATGCCCAGGGGTTTGTCTCTTCCATATACGATAGGATGCATCAAGacctgggccgatgacgggaCCTACGCCAAAGATTTTATCTAGAAAACATAACCTCTTTACaatatacatgtatttttgttcaacattaaatatgtaaactaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195402 True 421 lncRNA 0.43 3 25975071 25985891
TU195403 False 313 lncRNA 0.43 2 25983672 25985891
XR_002651032.1 False 406 lncRNA 0.43 3 25975085 25985890

Neighbor

gene id symbol gene type direction distance location
saxo1 NA coding upstream 170686 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 298699 25673233 ~ 25676372 (+)
LOC103047430 NA coding upstream 354008 25617325 ~ 25621063 (+)
rce1 rce1,LOC107683501,LOC107731886,LOC107710076,LOC107679240 coding upstream 530524 25434570 ~ 25444547 (+)
LOC103027853 rab1ba,LOC103027853,LOC100695098,LOC107679256,LOC105022126,LOC103373258,LOC106602974,LOC101478491 coding upstream 606585 25354818 ~ 25368486 (+)
col25a1 col25a1,LOC102793499 coding downstream 130565 26116456 ~ 26444978 (+)
etnppl etnppl coding downstream 462901 26448792 ~ 26467820 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding downstream 616124 26602015 ~ 26607191 (+)
focad focad,LOC101469292,LOC104964325 coding downstream 949192 26935083 ~ 27035079 (+)
ndufs2 ndufs2 coding downstream 1114933 27100824 ~ 27115844 (+)
G144395 adamtsl1 non-coding upstream 104106 25870669 ~ 25870965 (+)
LOC111194347 NA non-coding upstream 126971 25826581 ~ 25848100 (+)
G144388 NA non-coding upstream 130066 25843789 ~ 25845005 (+)
G144389 NA non-coding upstream 132990 25836505 ~ 25842081 (+)
G144359 larp7 non-coding upstream 164096 25743607 ~ 25810975 (+)
G144401 NA non-coding downstream 25179 26011070 ~ 26011495 (+)
G144404 NA non-coding downstream 25973 26011864 ~ 26012161 (+)
G144402 NA non-coding downstream 27519 26013410 ~ 26016437 (+)
G144403 NA non-coding downstream 31506 26017397 ~ 26017685 (+)
G144454 NA non-coding downstream 230515 26216406 ~ 26216976 (+)
G144372 NA other upstream 186229 25786737 ~ 25788842 (+)
G144333 NA other upstream 320821 25653006 ~ 25654250 (+)
G144290 NA other upstream 500377 25472123 ~ 25474694 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other upstream 596306 25375998 ~ 25378765 (+)
G144146 men1,LOC107660721 other upstream 970900 24998773 ~ 25004171 (+)
G144584 NA other downstream 764944 26750835 ~ 26754442 (+)
G144613 NA other downstream 821825 26807716 ~ 26812127 (+)
G144671 NA other downstream 1220851 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 2640153 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 3169834 29155725 ~ 29170570 (+)

Expression


Co-expression Network