G144402


Basic Information

Item Value
gene id G144402
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26013410 ~ 26016437 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195405
CACTGGGAtagagtgcagtgtgttgtgatTGTACCCAACATTAGATTTGAGGATctcagcagcactgcagtgccATCAAACACCAATGAACAAAATCCACAACGGAATGAACTGGAATCCAATGGATTTGGGAGCGAGAAAGAATCTGAAAGAATGTTCACAGGAGCAGGAAGAATGCTGGATTGGCCTGGAACAGCAGACTGCACAAAGCCCTACAAAACTTCTCCCACACATGACTGTTCAGAGAGAGCAATCAAAAGGATTGCTGGACGATTTCAACAAAAACAATTCCCTAAAACTTAGGTTACAGCTTTATTGATACTCCTGAGAACTACTGGATAAAGTGTCGTTTGGAAGTCCTGAAGTGACTCTTCCTGTTTTTCCACCTGTCAACACACAACTAGGTCAGAGACTCAGAGGCCTAGGGAGTGTACAGAATTGATCTGGAATATATGACATCTACATATTCTATGGACATATAACACTGGAGGTAGCCAAAAATGGGTTCTGTCCGTTATATGAGAGATAATGAGAAGATGTACTGTACCTACTGCACAGAATGTGGATAGCAATACATCTCTAAAACTCTATGAACTCTCATCAGCTTGTAAACATTGGGATGATTGAGATTAAATGTGTGACTTTATGGAATCATTCATTTGAAACTTACTGTCATATGCTGTCTAAGCCGTTTTAGCTTTATCACATCAATTTaacctt
>TU195406
GATTTGAGGATctcagcagcactgcagtgccATCAAACACCAATGAACAAAATCCACAACGGAATGAACTGGAATCCAATGGATTTGGGAGCGAGAAAGAATCTGAAAGAATGTTCACAGGAGCAGGAAGAATGCTGGATTGGCCTGGAACAGCAGACTGCACAAAGCCCTACAAAACTTCTCCCACACATGACTGTTCAGAGAGAGCAATCAAAAGGATTGCTGGACGATTTCAACAAAAACAATTCCCTAAAACTTAGGTTACAGCTTTATTGATACTCCTGAGAACTACTGGATAAAGTGTCGTTTGGAAGTCCTGAAGTGACTCTTCCTGTTTTTCCACCTGTCAACACACAACTAGGTCAGAGACTCAGAGGCCTAGGGAGTGTACAGAATTGATCTGGAATATATGACATCTACATATTCTATGGACATATAACACTGGAGGTAGCCAAAAATGGGTTCTGTCCGTTATATGAGAGATAATGAGAAGATGTACTGTACCTACTGCACAGAATGTGGATAGCAATACATCTCTAAAACTCTATGAACTCTCATCAGCTTGTAAACATTGGGATGATTGAGATTAAATGTGTGACTTTATGGAATCATTCATTTGAAACTTACTGTCATATGCTGTCTAAGCCGTTTTAGCTTTATCACATCAATTTaacctttctttttttacaacagcctccgcctcctcctccggctacatgccttacggctgaaacacttgcctcattctttactggcaaagtggcggccatcagcaaccagtttactgatgcacaatgtagcagtcctactgcatcctctactgcccggtgtccctccaccgaaggcgttgctttctcctcgttcactcctctcactgagaacgagacactggctctcctaacacgtagccgtcctactacgtgtccgcttgacccaattccttcaaacctactgcaaactatcgcacctgcaatcattccggctatcacttacacgatcaatgcctctttaacttctggtgtattccccactgctttcaaacaagcacatgtgacaccactgcttaaaaagccttctctcaaccccgcccaggttgacaactacagaccggtctcactgctaccctttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195405 False 720 lncRNA 0.40 2 26013410 26015984
TU195406 True 1130 lncRNA 0.44 2 26013453 26016437

Neighbor

gene id symbol gene type direction distance location
saxo1 NA coding upstream 209025 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 337038 25673233 ~ 25676372 (+)
LOC103047430 NA coding upstream 392347 25617325 ~ 25621063 (+)
rce1 rce1,LOC107683501,LOC107731886,LOC107710076,LOC107679240 coding upstream 568863 25434570 ~ 25444547 (+)
LOC103027853 rab1ba,LOC103027853,LOC100695098,LOC107679256,LOC105022126,LOC103373258,LOC106602974,LOC101478491 coding upstream 644924 25354818 ~ 25368486 (+)
col25a1 col25a1,LOC102793499 coding downstream 100019 26116456 ~ 26444978 (+)
etnppl etnppl coding downstream 432355 26448792 ~ 26467820 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding downstream 585578 26602015 ~ 26607191 (+)
focad focad,LOC101469292,LOC104964325 coding downstream 918646 26935083 ~ 27035079 (+)
ndufs2 ndufs2 coding downstream 1084387 27100824 ~ 27115844 (+)
G144404 NA non-coding upstream 1249 26011864 ~ 26012161 (+)
G144401 NA non-coding upstream 1915 26011070 ~ 26011495 (+)
LOC111194346 NA non-coding upstream 27519 25975071 ~ 25985891 (+)
G144395 adamtsl1 non-coding upstream 142445 25870669 ~ 25870965 (+)
G144388 NA non-coding upstream 168405 25843789 ~ 25845005 (+)
G144403 NA non-coding downstream 960 26017397 ~ 26017685 (+)
G144454 NA non-coding downstream 199969 26216406 ~ 26216976 (+)
G144479 ostc,LOC106609071 non-coding downstream 454347 26470784 ~ 26472561 (+)
G144480 ostc,LOC106609071,LOC106577458 non-coding downstream 457173 26473610 ~ 26475430 (+)
G144512 NA non-coding downstream 480348 26496785 ~ 26497142 (+)
G144372 NA other upstream 224568 25786737 ~ 25788842 (+)
G144333 NA other upstream 359160 25653006 ~ 25654250 (+)
G144290 NA other upstream 538716 25472123 ~ 25474694 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other upstream 634645 25375998 ~ 25378765 (+)
G144146 men1,LOC107660721 other upstream 1009239 24998773 ~ 25004171 (+)
G144584 NA other downstream 734398 26750835 ~ 26754442 (+)
G144613 NA other downstream 791279 26807716 ~ 26812127 (+)
G144671 NA other downstream 1190305 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 2609607 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 3139288 29155725 ~ 29170570 (+)

Expression


Co-expression Network