G144479 (ostc,LOC106609071)


Basic Information

Item Value
gene id G144479
gene name ostc,LOC106609071
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26470784 ~ 26472561 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195496
TCTGGaaagaacatttattttgttttttaatagaaaaaacagCTTGACCAATGACACAGCTGCCAGattttcagacttttttttttactttctacaAAACAAGTGCATAAGGAGAGGTTTCACATGGAGATGGATTTTGATCAAATAACACACAGCTCCCATACACTGCAAGCTTTTCCTCCTTCTGTATCTGTAGATCATCAATAGTAGGTATGCAAATTTTGCAGGATTCAAGAAATCTTAACTCCATTCAGTAACGTGGAGCTGTTGGGGACTAGTCattcgcacacacacatacaccgaGATAAAACTGGGGGCAGAAAACGAAAACCTGCCCTGCAAACTGATCCTTGGCACTGGAAAGGGGTTTCATCTTCATCTGCAGTCATTCTTTAATCTCTTTCACACTAAAGGCCTTTTCTGAGCAGCTTTAACCCATGAGGTAGCCCGGCAGCTTCATCCTCATGAACACTCTGGCCATGAAGAAGCTCAACAGCACGCTCACAAAGCCGATGAAGAGCAGCAAGAAACGGTTGAGTTTTGGAATGTTGGGTGCATTAGAGCGGTCCAAAATAATAAAGCCAAGACCACCCATGGtaaagaggaagctggatgccAAACCTTCCATGATGTACTGCCCATTCACC

Function

symbol description
ostc Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in several structures, including axis; digestive system; hatching gland; notochord; and polster. Orthologous to human OSTC (oligosaccharyltransferase complex non-catalytic subunit).

NR:

description
PREDICTED: oligosaccharyltransferase complex subunit ostc isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195496 True 647 lncRNA 0.43 2 26470784 26472561

Neighbor

gene id symbol gene type direction distance location
etnppl etnppl coding upstream 2964 26448792 ~ 26467820 (+)
col25a1 col25a1,LOC102793499 coding upstream 25806 26116456 ~ 26444978 (+)
saxo1 NA coding upstream 666399 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 794412 25673233 ~ 25676372 (+)
LOC103047430 NA coding upstream 849721 25617325 ~ 25621063 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding downstream 129454 26602015 ~ 26607191 (+)
focad focad,LOC101469292,LOC104964325 coding downstream 462522 26935083 ~ 27035079 (+)
ndufs2 ndufs2 coding downstream 628263 27100824 ~ 27115844 (+)
LOC111194356 NA coding downstream 775790 27248351 ~ 27251123 (+)
LOC111194351 NA coding downstream 829305 27301866 ~ 27305675 (+)
G144454 NA non-coding upstream 253808 26216406 ~ 26216976 (+)
G144403 NA non-coding upstream 453099 26017397 ~ 26017685 (+)
G144402 NA non-coding upstream 454347 26013410 ~ 26016437 (+)
G144404 NA non-coding upstream 458623 26011864 ~ 26012161 (+)
G144401 NA non-coding upstream 459289 26011070 ~ 26011495 (+)
G144480 ostc,LOC106609071,LOC106577458 non-coding downstream 1049 26473610 ~ 26475430 (+)
G144512 NA non-coding downstream 24224 26496785 ~ 26497142 (+)
G144531 gpr78,LOC103025717,LOC108267410,LOC107733618,LOC107554869,LOC103387074 non-coding downstream 53212 26525773 ~ 26526978 (+)
G144556 NA non-coding downstream 134783 26607344 ~ 26607785 (+)
G144553 NA non-coding downstream 135650 26608211 ~ 26608684 (+)
G144372 NA other upstream 681942 25786737 ~ 25788842 (+)
G144333 NA other upstream 816534 25653006 ~ 25654250 (+)
G144290 NA other upstream 996090 25472123 ~ 25474694 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other upstream 1092019 25375998 ~ 25378765 (+)
G144146 men1,LOC107660721 other upstream 1466613 24998773 ~ 25004171 (+)
G144584 NA other downstream 278274 26750835 ~ 26754442 (+)
G144613 NA other downstream 335155 26807716 ~ 26812127 (+)
G144671 NA other downstream 734181 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 2153483 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 2683164 29155725 ~ 29170570 (+)

Expression


Co-expression Network