G144480 (ostc,LOC106609071,LOC106577458)


Basic Information

Item Value
gene id G144480
gene name ostc,LOC106609071,LOC106577458
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26473610 ~ 26475430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195499
AAAAGGCCACTGGGCGCTGGTGACCATGTTCATCAGTCATTGAGCCAACACTGGGCGGCTCAACAATAACATCGTAGattattcCTCCAGTGATGAGGAAATACGATACAATCACCACAGCGTACACAGTCATCGCAGACGGCATGTGAAGCCATGTCGGCTTCTTAATTTTGATATTAGGACATTCTAACACCGCGAACGGAAGACCAACCAGCGTCTCCATGATTAATTTAACTCCTGTTCTGAAGCTCCAGCCGCTCTCAGTTCAGGAGACTCCAGAGCGCCGTAAGACGACGTGTACAGGAAATAGCTGCTCAGCCCCGACCAATGACCAGGTCCT

Function

symbol description
ostc Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in several structures, including axis; digestive system; hatching gland; notochord; and polster. Orthologous to human OSTC (oligosaccharyltransferase complex non-catalytic subunit).

NR:

description
oligosaccharyltransferase complex subunit OSTC

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195499 True 340 lncRNA 0.50 2 26473610 26475430

Neighbor

gene id symbol gene type direction distance location
etnppl etnppl coding upstream 5790 26448792 ~ 26467820 (+)
col25a1 col25a1,LOC102793499 coding upstream 28632 26116456 ~ 26444978 (+)
saxo1 NA coding upstream 669225 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 797238 25673233 ~ 25676372 (+)
LOC103047430 NA coding upstream 852547 25617325 ~ 25621063 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding downstream 126585 26602015 ~ 26607191 (+)
focad focad,LOC101469292,LOC104964325 coding downstream 459653 26935083 ~ 27035079 (+)
ndufs2 ndufs2 coding downstream 625394 27100824 ~ 27115844 (+)
LOC111194356 NA coding downstream 772921 27248351 ~ 27251123 (+)
LOC111194351 NA coding downstream 826436 27301866 ~ 27305675 (+)
G144479 ostc,LOC106609071 non-coding upstream 1049 26470784 ~ 26472561 (+)
G144454 NA non-coding upstream 256634 26216406 ~ 26216976 (+)
G144403 NA non-coding upstream 455925 26017397 ~ 26017685 (+)
G144402 NA non-coding upstream 457173 26013410 ~ 26016437 (+)
G144404 NA non-coding upstream 461449 26011864 ~ 26012161 (+)
G144512 NA non-coding downstream 21355 26496785 ~ 26497142 (+)
G144531 gpr78,LOC103025717,LOC108267410,LOC107733618,LOC107554869,LOC103387074 non-coding downstream 50343 26525773 ~ 26526978 (+)
G144556 NA non-coding downstream 131914 26607344 ~ 26607785 (+)
G144553 NA non-coding downstream 132781 26608211 ~ 26608684 (+)
G144573 NA non-coding downstream 245002 26720432 ~ 26721157 (+)
G144372 NA other upstream 684768 25786737 ~ 25788842 (+)
G144333 NA other upstream 819360 25653006 ~ 25654250 (+)
G144290 NA other upstream 998916 25472123 ~ 25474694 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other upstream 1094845 25375998 ~ 25378765 (+)
G144146 men1,LOC107660721 other upstream 1469439 24998773 ~ 25004171 (+)
G144584 NA other downstream 275405 26750835 ~ 26754442 (+)
G144613 NA other downstream 332286 26807716 ~ 26812127 (+)
G144671 NA other downstream 731312 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 2150614 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 2680295 29155725 ~ 29170570 (+)

Expression


Co-expression Network