G144556


Basic Information

Item Value
gene id G144556
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26607344 ~ 26607785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195584
TTCCTACATACCGTCCTGATGTGCTGTAGCCTCTATGGCTGGTTAGGAAAGAGGTGTTTTACAACTGTAAGTCACTGGTATTGGTAGATAATATTTATTGATCAGATATTGAAAAACCTAATTCTAGTGTTAAGCTATTGACACTGAGGGTTGTTGTGTATGAGTAATTACCCTAACATGTGAACTATTTTAAGGTAAGTTACCAAGACTAAATAAAAGCTTGTATGGccaaaccatagactgtatataaagatggacgccgtgtcgccgttcccattcattcaatgaaaatgaagccaaaatcttccgcaattttggcgattcagagaccagagtctgcgcagtagagaccagaggagggagagacgcctactcatttaaataaccccgcccctgagggctgcctcgcggtcacagactgcagagcagggcggagcggagc

Function

GO:

id name namespace
GO:0009314 response to radiation biological_process
GO:0009416 response to light stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195584 True 442 lncRNA 0.44 1 26607344 26607785

Neighbor

gene id symbol gene type direction distance location
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 153 26602015 ~ 26607191 (+)
etnppl etnppl coding upstream 139524 26448792 ~ 26467820 (+)
col25a1 col25a1,LOC102793499 coding upstream 162366 26116456 ~ 26444978 (+)
saxo1 NA coding upstream 802959 25801919 ~ 25804385 (+)
LOC103042207 NA coding upstream 930972 25673233 ~ 25676372 (+)
focad focad,LOC101469292,LOC104964325 coding downstream 327298 26935083 ~ 27035079 (+)
ndufs2 ndufs2 coding downstream 493039 27100824 ~ 27115844 (+)
LOC111194356 NA coding downstream 640566 27248351 ~ 27251123 (+)
LOC111194351 NA coding downstream 694081 27301866 ~ 27305675 (+)
adgra3 adgra3,LOC107691845 coding downstream 1422972 28030757 ~ 28084025 (+)
G144531 gpr78,LOC103025717,LOC108267410,LOC107733618,LOC107554869,LOC103387074 non-coding upstream 80366 26525773 ~ 26526978 (+)
G144512 NA non-coding upstream 110202 26496785 ~ 26497142 (+)
G144480 ostc,LOC106609071,LOC106577458 non-coding upstream 131914 26473610 ~ 26475430 (+)
G144479 ostc,LOC106609071 non-coding upstream 134783 26470784 ~ 26472561 (+)
G144454 NA non-coding upstream 390368 26216406 ~ 26216976 (+)
G144553 NA non-coding downstream 426 26608211 ~ 26608684 (+)
G144573 NA non-coding downstream 112647 26720432 ~ 26721157 (+)
G144608 trmt10a non-coding downstream 175458 26783243 ~ 26785764 (+)
G144611 NA non-coding downstream 191131 26798916 ~ 26802021 (+)
G144617 NA non-coding downstream 209250 26817035 ~ 26817327 (+)
G144372 NA other upstream 818502 25786737 ~ 25788842 (+)
G144333 NA other upstream 953094 25653006 ~ 25654250 (+)
G144290 NA other upstream 1132650 25472123 ~ 25474694 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other upstream 1228579 25375998 ~ 25378765 (+)
G144146 men1,LOC107660721 other upstream 1603173 24998773 ~ 25004171 (+)
G144584 NA other downstream 143050 26750835 ~ 26754442 (+)
G144613 NA other downstream 199931 26807716 ~ 26812127 (+)
G144671 NA other downstream 598957 27206742 ~ 27208591 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 2018259 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 2547940 29155725 ~ 29170570 (+)

Expression


Co-expression Network