G144642


Basic Information

Item Value
gene id G144642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27083330 ~ 27285363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU195695
GACtgttaacttttaatttaagtAACATTCTTTGAAATCATGACTGTTTGAACAAGCAAGCTAATTAGACAGAGCTGTACAACAGAAGATTGGAACTACTGTACCATGTAAGAACAGCACGATTTAATAAGAACTTTAGCTTAGTCAAAGGGTGTAGTTTAGTTAAGTTTAACAACAATATATTAGATGACAATGTAGAGTGTTAAAGGGTTTAGAGTGTTATGGTTAGTCCAGAAAGTTAATAACATACCAAAAAACACAGGTTCGCTCATCTCGCTTTCTCTCCTTGTCCCACAGTAGTCAGAGAATACAGTCTGTGCTTGAAACATGTACTTGCAGGCTGGGTTATATtccaaagaaaaaacatttcctTCTGTTTCAACTATTTGTTCTTTCTGTAAAACAACATACCACAAGAATCACTGTAAACATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195695 True 434 lncRNA 0.34 2 27083330 27285363

Neighbor

gene id symbol gene type direction distance location
focad focad,LOC101469292,LOC104964325 coding upstream 48251 26935083 ~ 27035079 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 476139 26602015 ~ 26607191 (+)
etnppl etnppl coding upstream 615510 26448792 ~ 26467820 (+)
col25a1 col25a1,LOC102793499 coding upstream 638352 26116456 ~ 26444978 (+)
saxo1 NA coding upstream 1278945 25801919 ~ 25804385 (+)
LOC111194351 NA coding downstream 16503 27301866 ~ 27305675 (+)
adgra3 adgra3,LOC107691845 coding downstream 745394 28030757 ~ 28084025 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 1014133 28299496 ~ 28368962 (+)
LOC103035875 LOC108437090 coding downstream 1125950 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 1172541 28457904 ~ 28475027 (+)
G144617 NA non-coding upstream 266003 26817035 ~ 26817327 (+)
G144611 NA non-coding upstream 281309 26798916 ~ 26802021 (+)
G144608 trmt10a non-coding upstream 297566 26783243 ~ 26785764 (+)
G144573 NA non-coding upstream 362173 26720432 ~ 26721157 (+)
G144553 NA non-coding upstream 474646 26608211 ~ 26608684 (+)
G144684 NA non-coding downstream 12082 27297445 ~ 27300088 (+)
LOC111194352 NA non-coding downstream 150450 27435813 ~ 27438301 (+)
G144782 NA non-coding downstream 151713 27437076 ~ 27439508 (+)
LOC111194353 NA non-coding downstream 153043 27438406 ~ 27440052 (+)
G144833 NA non-coding downstream 369820 27655183 ~ 27657850 (+)
G144613 NA other upstream 271203 26807716 ~ 26812127 (+)
G144584 NA other upstream 328888 26750835 ~ 26754442 (+)
G144372 NA other upstream 1294488 25786737 ~ 25788842 (+)
G144333 NA other upstream 1429080 25653006 ~ 25654250 (+)
G144290 NA other upstream 1608636 25472123 ~ 25474694 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 1340681 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 1870362 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 2143662 29429025 ~ 29432026 (+)
G145438 NA other downstream 2892841 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 3044095 30329458 ~ 30331665 (+)

Expression


Co-expression Network