G42952


Basic Information

Item Value
gene id G42952
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2569774 ~ 2570203 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48776
CGCACATTCCGGGGCCATCTTCCTCTTCCTGTTCATTACATACTCGATTTTAGAGCAGCAAGATGTCTGGATTTCTGCGGGGAATTGCTCGGATCCGCACCGCTCCGGCTCTGCGGGGATCAACCATCACCCAGCGAGCCAACATCGCTTCGCGACCTGCCAAGGATGCGCTGGGGCCCGCTGAGACAACAGCTGGTCTGGCCATATTTAGTCTTGCCATCCTGGGACCAGCTGGGTGGGTTCTGGCCAACCTGGAAAACTATAAAAAGAGGGACTCCGCTGCATCTGAGTGATCAATCTGTCATTGACTGAAAGCAGTTTGTCTGGTTTTATTGCTTTTAACACATTGGGACCACCATCACACAGACCTCCGACTTACCTGAACAGCAGAACGATTCCTCTCCTTTGAGCCACCCAGCTACCTCTCCATGCGACTGGTTACTTTCCTCCAAACACTCCGGTCTTCTTTACACCGAGCATCTGCTCCTTCTTACCAACTGTGTAATAATAACATATAATCATGGGTGTTTCTTATTACCTGGAGCTGTTACATTTGAAATAAACCATTATTTAAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGATATTGTGCAATTTTTATATCTAAATTATTAGCTGACCAGTCACACGTTTGTGACATATTATGTTCTCTATAGCATGTGTTTATGGTTAGTAAATTGACAGTAACTGTATTTCTGTTGTATATGTTAAGGAATGATGCAGCATCTTTGGGGTGTTTTATTGCCATTATGATTATGACTAAGTTATGGTTTAATTTCATAAAGAACATGCAATCATACTTGAAATCATGCATCATTGATCATGTTAAGAGATAATGTAATGATGACGCAGGTAGTGAATGACACAATGGATCAAATAAAACTCAATAATTGTTAAAAAAAAATGCATTTGTTAGAACAAGAAGTAGATTAAAATCCATTACAGAACCACATTCCACAACTCCAGTTTCAGCATGCAAACCAG
>TU48777
CGCACATTCCGGGGCCATCTTCCTCTTCCTGTTCATTACATACTCGATTTTAGAGCAGCAAGATGTCTGGATTTCTGCGGGGAATTGCTCGGATCCGCACCGCTCCGGCTCTGCGGGGATCAACCATCACCCAGCGAGCCAACATCGCTTCGCGACCTGCCAAGGATGCGCTGGGGCCCGCTGAGACAACAGCTGGTCTGGCCATATTTAGTCTTGCCATCCTGGGACCAGCTGGGTGGGTTCTGGCCAACCTGGAAAACTATAAAAAGAGGGACTCCGCTGCATCTGAGTGATCAATCTGTCATTGACTGAAAGCAGTTTGTCTGGTTTTATTGCTTTTAACACATTGGGACCACCATCACACAGACCTCCGACTTACCTGAACAGCAGAACGATTCCTCTCCTTTGAGCCACCCAGCTACCTCTCCATGCGACTGGTTACTTTCCTCCAAACACTCCGGTCTTCTTTACACCGAGCATCTGCTCCTTCTTACCAACTGTGTAATAATAACATATAATCATGGGTGTTTCTTATTACCTGGAGCTGTTACATTTGAAATAAACCATTATTTAAATCTTAAAAAAAAAAAAAAAAAAAAATCGATATTGTGCAATTTTTATATCTAAATTATTAGCTGACCAGTCACACGTTTGTGACATATTATGTTCTCTATAGCATGTGTTTATGGTTAGTAAATTGACAGTAACTGTATTTCTGTTGTATATGTTAAGGAATGATGCAGCATCTTTGGGGTGTTTTATTGCCATTATGATTATGACTAAGTTATGGTTTAATTTCATAAAGAACATGCAATCATACTTGAAATCATGCATCATTGATCATGTTAAGAGATAATGTAATGATGACGCAGGTAGTGAATGACACAATGGATCAAATAAAACTCAATAATTGTTAAAAAAAAATGCATTTGTTAGAACAAGAAGTAGATTAAAATCCATTACAGAACCACATTCCACAACTCCAGTTTCAGCATGCAAACCAG
>TU48778
CGCACATTCCGGGGCCATCTTCCTCTTCCTGTTCATTACATACTCGATTTTAGAGCAGCAAGATGTCTGGATTTCTGCGGGGAATTGCTCGGATCCGCACCGCTCCGGCTCTGCGGGGATCAACCATCACCCAGCGAGCCAACATCGCTTCGCGACCTGCCAAGGATGCGCTGGGGCCCGCTGAGACAACAGCTGGTCTGGCCATATTTAGTCTTGCCATCCTGGGACCAGCTGGGTGGGTTCTGGCCAACCTGGAAAACTATAAAAAGAGGGACTCCGCTGCATCTGAGTGATCAATCTGTCATTGACTGAAAGCAGTTTGTCTGGTTTTATTGCTTTTAACACATTGGGACCACCATCACACAGACCTCCGACTTACCTGAACAGCAGAACGATTCCTCTCCTTTGAGCCACCCAGCTACCTCTCCATGCGACTGGTTACTTTCCTCCAAACACTCCGGTCTTCTTTACACCGAGCATCTGCTCCTTCTTACCAACTGTGTAATAATAACATATAATCATGGGTGTTTCTTATTACCTGGAGCTGTTACATTTGAAATAAACCATTATTTAAATCTTAAAAAAAAAAAAAAAAAATCGATATTGTGCAATTTTTATATCTAAATTATTAGCTGACCAGTCACACGTTTGTGACATATTATGTTCTCTATAGCATGTGTTTATGGTTAGTAAATTGACAGTAACTGTATTTCTGTTGTATATGTTAAGGAATGATGCAGCATCTTTGGGGTGTTTTATTGCCATTATGATTATGACTAAGTTATGGTTTAATTTCATAAAGAACATGCAATCATACTTGAAATCATGCATCATTGATCATGTTAAGAGATAATGTAATGATGACGCAGGTAGTGAATGACACAATGGATCAAATAAAACTCAATAATTGTTAAAAAAAAATGCATTTGTTAGAACAAGAAGTAGATTAAAATCCATTACAGAACCACATTCCACAACTCCAGTTTCAGCATGCAAACCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48776 False 430 TUCP 0.40 1 2569774 2570203
TU48777 False 422 TUCP 0.41 1 2569774 2570195
TU48778 True 419 TUCP 0.36 1 2569774 2570192

Expression


Co-expression Network