G144953 (sec24d,LOC103036498)


Basic Information

Item Value
gene id G144953
gene name sec24d,LOC103036498
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28381692 ~ 28384123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196077
GTTGTGGATCCGCAGCCGCCTCTGACCACTGATAGAGGTGTACAGCAGAGCACACTGTATTAGTGCTCCAGACTCCTCACTGAGTGTGTCATCGTGTTTAAACTCCACTGTAACAGCCTTATCACAATCCACAGCAGCCATCTCTATATCTGTGGTGTTGTTCATGTAGATAGCACCAAAGATATCTGTAGCCCTGAAACCTGTGCTTGTGCGGACCCTCATGATGGCATCAAATCCAATGGACCTCTCCACGTCTCGCCTTAGATCAGTAAGGAAATGTTCACCATCTACCTGAATCTGGAAGTTGCTGTATTTGTACACAGAGCCACCAGTGTGTGTTGAGATGTTTCCCATAGTGGCGATGTCCATGTACTGATTAGGAAACACAAACAGGTCCACAGAACAACCCTGGCCAACACAGTCTTTGGTCAGCTGCTCGTACACACCCCGCTGTGGCTGAAACAGAGtCTTTTCTTTCTCAGTGTTCACAAGCTTCCGGTCATCTCGGTTCTTCAGCTTGCCCGGAGCCTCGGCGGTAGGCAGTGAGGAGTGGAAG

Function

symbol description
sec24d Predicted to enable SNARE binding activity and zinc ion binding activity. Acts upstream of or within cartilage morphogenesis; embryonic viscerocranium morphogenesis; and extracellular matrix constituent secretion. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in several structures, including immature eye; myotome; nervous system; notochord; and pharyngeal arch cartilage. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to human SEC24D (SEC24 homolog D, COPII coat complex component).

NR:

description
protein transport protein Sec24D

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196077 True 556 lncRNA 0.50 5 28381692 28384123

Neighbor

gene id symbol gene type direction distance location
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding upstream 12730 28299496 ~ 28368962 (+)
adgra3 adgra3,LOC107691845 coding upstream 297667 28030757 ~ 28084025 (+)
LOC111194351 NA coding upstream 1076017 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 1130569 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 1265848 27100824 ~ 27115844 (+)
LOC103035875 LOC108437090 coding downstream 27190 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 73781 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 112517 28496640 ~ 28564802 (+)
LOC103034936 LOC108437088 coding downstream 236606 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 355068 28739191 ~ 28758078 (+)
G144948 NA non-coding upstream 4636 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 6708 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 411187 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 470565 27910696 ~ 27911127 (+)
G144856 NA non-coding upstream 494142 27857807 ~ 27887550 (+)
G144969 frem1 non-coding downstream 184270 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 390574 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 391759 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 410099 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 463822 28847945 ~ 28850850 (+)
G144671 NA other upstream 1173101 27206742 ~ 27208591 (+)
G144613 NA other upstream 1569565 26807716 ~ 26812127 (+)
G144584 NA other upstream 1627250 26750835 ~ 26754442 (+)
G144372 NA other upstream 2592850 25786737 ~ 25788842 (+)
G144333 NA other upstream 2727442 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 241921 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 771602 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 1044902 29429025 ~ 29432026 (+)
G145438 NA other downstream 1794081 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1945335 30329458 ~ 30331665 (+)

Expression


Co-expression Network