G144969 (frem1)


Basic Information

Item Value
gene id G144969
gene name frem1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28568393 ~ 28570000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196112
catcttttttgatacttcagccatttctcattttccgcaaataaatgctctatttttatttggaatttgggagaaatgttgtccatagtttacagaataaaataataatgttcattttactcaaacatatacctaagaaaaaaaaacagtattaaggGTAACTTTAGAGAAAGATGTCAgctaacagtaaaaaaaaaaaaaagaaaaaaaaaagctatgacCAAAATCATGTTTAACTTCAATATACATAAACTATACATAGTCTTTGTTTCAATTTACGTCACATGAACGTGTATGAGCTCCTCCATTCTGCAACCAGCCTCAAACATCTCTGATATTCATTTAAACACTTTAGAGCTGCAGTACTACAAGAACTGGGGTCAAGTCAGTGCGTTGTGATATTTGAGGTCCAGCATGTACAGAGTGCTGGTTGACTGTTTACTGAGTGCACTGTCTTTCATTCTGTATTCTCAGACTGAAAGTGAGAAGAGTGTAGATGATTTAAAGCTCATGTTTTTACGTAGCAAACATAGCGCTGCTTTCTTCCTGTCTTGCAGTCTCGTATTTGCCATTTTGTCTTCTTCCAGACCAAAACACATTTCTTGTTCCCTTTCTTCCGGGTTCGAGGAGGACTCTGCCTCCAGTTGGTGTAAGTGACGGGCTCTCCGCCCACCCATTCCCAACGACCTTTACCCTCCCGGTCATTCAAGCCTATCCAGAAAGGCTTCCTCTCATTAAAGTCCCACAACCAGTC

Function

symbol description
frem1 Predicted to enable carbohydrate binding activity and metal ion binding activity. Involved in craniofacial suture morphogenesis. Predicted to be located in basement membrane and extracellular region. Predicted to be integral component of membrane. Implicated in congenital diaphragmatic hernia.

NR:

description
PREDICTED: FRAS1-related extracellular matrix protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196112 True 754 lncRNA 0.38 2 28568393 28570000

Neighbor

gene id symbol gene type direction distance location
LOC103035264 LOC108437087 coding upstream 3591 28496640 ~ 28564802 (+)
LOC103035569 NA coding upstream 93366 28457904 ~ 28475027 (+)
LOC103035875 LOC108437090 coding upstream 123304 28411313 ~ 28445089 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding upstream 199431 28299496 ~ 28368962 (+)
adgra3 adgra3,LOC107691845 coding upstream 484368 28030757 ~ 28084025 (+)
LOC103034936 LOC108437088 coding downstream 50729 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 169191 28739191 ~ 28758078 (+)
phf23 phf23,LOC108413721,LOC107687050,LOC107687030,LOC107561685,LOC107593540 coding downstream 237992 28807992 ~ 28814308 (+)
LOC103046260 plscr3,LOC103046260,LOC107593564,LOC107687051,LOC107754701,LOC107561702,LOC108267765 coding downstream 258071 28828071 ~ 28844665 (+)
LOC103045946 senp3b,LOC108443968 coding downstream 306737 28876737 ~ 28885074 (+)
G144953 sec24d,LOC103036498 non-coding upstream 184270 28381692 ~ 28384123 (+)
G144948 NA non-coding upstream 191337 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 193409 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 597888 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 657266 27910696 ~ 27911127 (+)
G145007 NA non-coding downstream 204697 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 205882 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 224222 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 277945 28847945 ~ 28850850 (+)
G145116 mpdu1,mpdu1b,LOC107754705,LOC107687039,LOC107750562 non-coding downstream 355729 28925729 ~ 28928948 (+)
G144671 NA other upstream 1359802 27206742 ~ 27208591 (+)
G144613 NA other upstream 1756266 26807716 ~ 26812127 (+)
G144584 NA other upstream 1813951 26750835 ~ 26754442 (+)
G144372 NA other upstream 2779551 25786737 ~ 25788842 (+)
G144333 NA other upstream 2914143 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 56044 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 585725 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 859025 29429025 ~ 29432026 (+)
G145438 NA other downstream 1608204 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1759458 30329458 ~ 30331665 (+)

Expression


Co-expression Network