G145007


Basic Information

Item Value
gene id G145007
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28774697 ~ 28775779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196153
CAGATCTGAGGACTAGAGTCCCTGGGAGCTGCCTTGAGATTCATCAAGAGTAGAATTTATCTGAAAGatgaacagaaaaaacaacagGATATGCATAGAGTATAAAAGTTGGGGGTGGATGCTCAGTTAGCTGTTCAGCACAGTTATACAGGCTTGCAACACAGTATTCATTGTAATGCAAGTCCTAAATTCAAGTTATGAAAACCgtttttgttaaattttaaagaactgcagctgAGAAAGCAGAAACATTCTGTGACAGTCACCAGACTGGCTTACTGCTCTCCAGGTAGGTTCTAGATGTTTGAGTGTGGAAAAGAATGAACTGACCAGAGGTACAAAATGATTGAATTTCCTGCAAATTTTTCATACATATAGCCATATGCAATTACCAAGAGTTAGCTTATATTGTACATAAATCCTTAAATACTTCTTTCAACACTGTACCTCAACAATACTCCAACAGCATTAAATTTACCCTGAATTCAGCTGGGACGTAGAGGtctaaacATTGCCAAAATGTCCAGAGTGCCTGTAGCACATAGATACTTTTTTCAATAGACCCCCATTTAAAACAAAGTTAGAGGCATGGGGTCCAAACAGACATTCCGATAAAAATCTTTGTTGCCTTAAAGTTTATCCATTCAGTActgtcaaaagttttaaaagaaaaaaaaatcacaggcaTCATTCACACATCATACTGTCTAATAGACCACAatttctcacacaaacacacacacaagcattcACTTCTCTCCTCCACGAGAACTGTAAGGCAGAGACAACCAttatgagagaaaaaaagaaaaggaaaactaGACAATGTCCCCAGTCCTCTTCAAGTCAGCCATCTCTACATCCCTAAAGCCTGTTTAGTCCAGATTTAGGCATCTGTCCAATCACCCTCAGACTGGGTGCTGTGAGAAGCTGCCGTCGACACGGACAGAGAGCAGACATGGATTTGCTCATCCAGTCTCTTAGCTGGATAATCACCAAAGTCGGTGCTGGTGGAGGTTTCGGCTAAGGACGGACCGGACATCAGAGGTAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196153 True 1054 lncRNA 0.40 2 28774697 28775779

Neighbor

gene id symbol gene type direction distance location
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding upstream 16619 28739191 ~ 28758078 (+)
LOC103034936 LOC108437088 coding upstream 150210 28620729 ~ 28624487 (+)
LOC103035264 LOC108437087 coding upstream 209895 28496640 ~ 28564802 (+)
LOC103035569 NA coding upstream 299670 28457904 ~ 28475027 (+)
LOC103035875 LOC108437090 coding upstream 329608 28411313 ~ 28445089 (+)
phf23 phf23,LOC108413721,LOC107687050,LOC107687030,LOC107561685,LOC107593540 coding downstream 32213 28807992 ~ 28814308 (+)
LOC103046260 plscr3,LOC103046260,LOC107593564,LOC107687051,LOC107754701,LOC107561702,LOC108267765 coding downstream 52292 28828071 ~ 28844665 (+)
LOC103045946 senp3b,LOC108443968 coding downstream 100958 28876737 ~ 28885074 (+)
LOC103045638 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107687036,LOC107561738,LOC107704251,LOC107593628,LOC105895537 coding downstream 110488 28886267 ~ 28892998 (+)
LOC103045346 LOC108443970 coding downstream 128895 28904674 ~ 28908104 (+)
G144969 frem1 non-coding upstream 204697 28568393 ~ 28570000 (+)
G144953 sec24d,LOC103036498 non-coding upstream 390574 28381692 ~ 28384123 (+)
G144948 NA non-coding upstream 397641 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 399713 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 804192 27969493 ~ 27970505 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 103 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 18443 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 72166 28847945 ~ 28850850 (+)
G145116 mpdu1,mpdu1b,LOC107754705,LOC107687039,LOC107750562 non-coding downstream 149950 28925729 ~ 28928948 (+)
G145159 NA non-coding downstream 396437 29172216 ~ 29179313 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other upstream 115776 28626044 ~ 28658921 (+)
G144671 NA other upstream 1566106 27206742 ~ 27208591 (+)
G144613 NA other upstream 1962570 26807716 ~ 26812127 (+)
G144584 NA other upstream 2020255 26750835 ~ 26754442 (+)
G144372 NA other upstream 2985855 25786737 ~ 25788842 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 379946 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 653246 29429025 ~ 29432026 (+)
G145438 NA other downstream 1402425 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1553679 30329458 ~ 30331665 (+)
G145543 NA other downstream 1893020 30668799 ~ 30672187 (+)

Expression


Co-expression Network