G145101


Basic Information

Item Value
gene id G145101
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28812741 ~ 28816134 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196283
TTGGAGAACAGCATCACAAACTAACCAAAGGACTCTCTGAGCAGATTCACCCAGCTGAAGACAAgatctgaagaagaagaagaagaagaagatactGAGAAGATGGTGTCCCACAAGTATCTGCTGCCTGGTTTTGCTCTTTGCTTCTTAGTAGATGAGCTGTATGCATTCCTGCTACCAGACAGACTGCGGTTGGCCAGAAACACTCACAGACTCAGCCGGGACGTGTCTCATCACCTCTCTGAACTCACTGACCTGGCTGAGTTCATGCCAGACAATGGTGGTGAAATGACACAGGACTGGGACCCCAAACCTGCGAAATCCTTCACTGCCCACACTTCACCTGTAGAACACATTCCACCACCCCCGAAACCTCAACACCGCAACAACAAAGACAAGAGGGCGAGGGTTACTGTTCCCCTTGACCGCATTGGTAACTCCTACCTGTCCAGCAGAAACAGAAAGGAGGAACCTGAGGAAAACCTGGCCTATTTTAACGAGTGATTAACTACTGACGTCCATACATCAACTGGATTTACAGACGCAGACAAAGCCTAGTCTTGAACTAACTAACAGCACCAGTGGGAATTTTCAGTTAAAAAGTCTTTAAGTGCCTATTAGGCTAAACTTGTATCCAGAAAACAAACTGTTTGTAGCATtgcgtgtgtgtattttgtgagTGTTTTAACCTGTTATTTTGTTGTATGCATCATTGtcttatttattactatttaatatCGCCCTCTAGTGGTCGGCAAACTGACAGACACTTGTGTACTCGTGTGCCCATGCTAAATAAAGAGTTTTTGAAAGCAGAACAAATGACTTGCGAAACCATTTCTGATAGGATCCCCAATAAAGAAAAGGTTTTATTTCTTCAGGTACAGTTAAAGAAAACATCAGATGccaaaaatataacatttgcTTGGCTTTTCTCTTCGCTTTCATATATGTACAGTTCTCAAAGGATATGATATTTACAGAGTAAAATAGGAGAGGTGGGGGTGAGAGTCTACCTTTTGGGGATTTCAAGAGACCCCCACCTCACCAACCAACCAAAGAGAAAGCAAACGCCAGAAAGGGGGGTGGGAATGCCACAACATTTGCAGCATAAACTCTTCTGTACACAACAAAAAGAGAGCAGTTCTTCAAGCTACTTCCTAATAACAGCTTGTCATGGAAGTTACCCAATGCCTAATGGTGTGGGTGCAATCTTAACCAGTTCTCAGACAAGATATTATTAAAAGCtcatttagcttttttaacaataaatgaacaaattgtAATTACAACTATTAACTTTGTGTTAACGGAGCTTTAACAACCATTGGGCTGCTGCAAAGCTCCTGCCATACACCATCCACTTGAAAGTCTCACAAAATTTAAACTTTCTTTGAAAAGTAAatcaaaatgaaatatttaacgCACAACGTTAAACTGCTCACTCTATGCAGGAGAATGGGGAGTGGAGAAAGATAAATATTCCAATTTGAAAGATAACTGGTTGAATGAAGCCCATGAAAGaagaaacaaaagacaaaaagaaaaagaaacagaaaaaaacagtagaatTGAGTGTCTGAAATTAGCTTgataaaacaaatttaacaaataACATTCTCTGTATTGAGCACAGAGTGAGAACTGGAGTTGACAGCTAAGTGCTAGTTAATGAAAGGATTGCCATGGTGCTGCTGAAAAATCATACACAGACAAAAAAGCGCCAGTAACCTACAGACATTTACGTAATGCCTAGCGTTAATATCTCGCAATGCATATcgaaattattttaaacagatttaaaactATATTGAGACCAAACATTCATACTAATAGTGatgaagtaaataaagtaataaccTGTACATGGATAGTTTCTACATGTGGACAGGCAAAACTCACTGTTTACCTTCTTTACGCTCTGTTATTAGGAGACTGTTATAaataaaagttgtctgttttaatGTGTCAATCAGACTGTAGTATGCAAAGCTGCTTAAAAAGTTTTCCTGTGAACATGGAGGAATTAATCTGTTGATTTGAATATTTATGATTGtcaaatatgtaaataattctTTGACGTGTGGAAGGGACACAAACCAGCAACACTGACTGCAGAAAAAAACTCTTCCTCAAAAACAGTGTGTTGTTCTCACATGGGATAAAAAAGGTGAAGGACGGGAACATTCAGGGCTTTCTTTCAGAGTGGGCATTTTCTCTAAGGGTCTTTTTTATGGCTCAACCGTCGTGCATCCCTGCATTTGTGGCAGTAGAAGATGTCGGGTACGTTGGACTTCTTGATTTTCGCACAGGAGAGATGCACCCATATGCTGCAGTGGTTGCACTCGATCATCGGCCGTCCAGCGAAGGGTTTCCCACAGTAGCAGGTGATCAAGTCCCACGAGTCGTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196283 True 2412 TUCP 0.40 5 28812741 28816134

Neighbor

gene id symbol gene type direction distance location
elp5 NA coding downstream 6103 28801839 ~ 28806638 (-)
ctdnep1 ctdnep1a,dulda,LOC108413724,LOC107659132,LOC107672750,LOC107747382,LOC107744461,LOC107599947 coding downstream 14353 28774668 ~ 28798388 (-)
LOC103039768 gabarapa,gabarapb,gabarap,gbrap,LOC105911381,LOC106577557 coding downstream 39107 28769389 ~ 28773634 (-)
LOC103039467 NA coding downstream 44996 28759326 ~ 28767745 (-)
rap1gds1 rap1gds1,LOC107561516,LOC107552992 coding downstream 77742 28661489 ~ 28734999 (-)
tnk1 LOC108443979 coding upstream 31713 28847847 ~ 28871219 (-)
mpdu1 mpdu1,mpdu1b,LOC107750562,LOC107754705,LOC107687039,LOC107593662 coding upstream 106731 28922865 ~ 28928901 (-)
LOC111194357 NA coding upstream 114515 28930649 ~ 28934894 (-)
LOC111194358 LOC108267896,LOC108443962,LOC107663253,LOC107561795 coding upstream 267872 29084006 ~ 29090325 (-)
trnat-agu_3 NA coding upstream 294668 29110802 ~ 29110875 (-)
G145096 NA non-coding downstream 16117 28794135 ~ 28796624 (-)
G145081 NA non-coding downstream 153824 28656159 ~ 28658917 (-)
G145052 NA non-coding downstream 292994 28517464 ~ 28519747 (-)
G145046 NA non-coding downstream 359822 28449568 ~ 28452919 (-)
LOC111194354 NA non-coding downstream 577264 28234641 ~ 28235477 (-)
G145127 NA non-coding upstream 26425 28842559 ~ 28900895 (-)
G145133 senp3b,LOC108267653,LOC108443968,LOC107593615,LOC107754702,LOC107687035 non-coding upstream 66526 28882660 ~ 28885060 (-)
G145138 LOC108443970 non-coding upstream 88550 28904684 ~ 28908103 (-)
G145250 ap1s1,LOC107666294,LOC105921790,LOC103148860 non-coding upstream 277698 29093832 ~ 29169919 (-)
G145285 NA non-coding upstream 524338 29340472 ~ 29343893 (-)
LOC103030802 LOC103030802 other downstream 1737010 27055327 ~ 27075731 (-)
G144410 NA other downstream 3136422 25673184 ~ 25676319 (-)
LOC103041383 cj011,LOC103041383,LOC108436197,LOC108267333,LOC105908822,LOC106577738,LOC107752978,LOC107559952,LOC100331330 other downstream 3141201 25666280 ~ 25671540 (-)
G144310 rce1,LOC107683501,LOC107710076,LOC107679240 other downstream 3370524 25435138 ~ 25442217 (-)
G144233 taf6l,LOC107660726,LOC107731936,LOC107709373 other downstream 3594834 25215899 ~ 25217907 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other upstream 70106 28886240 ~ 28892998 (-)
G145141 NA other upstream 122859 28938993 ~ 28944061 (-)
LOC103030652 NA other upstream 1828261 30644395 ~ 30650306 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other upstream 2407313 31223447 ~ 31227578 (-)
G145899 NA other upstream 2667809 31483943 ~ 31486070 (-)

Expression


Co-expression Network