G145135 (eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896)


Basic Information

Item Value
gene id G145135
gene name eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28886240 ~ 28892998 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196334
TTTTGACTTGTTAAAAAGAAATACctttatttaagagaattaaaataaatactatacAGAATCCAATGTAGAAAAAGTTTAATACACGGCTTCTGTTTGAAAAAGGTTAACAATCACATTcttaataaattcatttaaaaatagcactgACCAATGTAAACCCCACATCCCCACAAGACAGGCATTTCAACAAGCAGAAAAAAGTAACATTATAATCTCTATAGACTCAATCATTTGTAGTTTGGTCCTTTAAAGACCCCTCCAATATATTTTGGTGAGGTAGGTTACTGGAGCGACACTCCAATACATAAGGACTTAATACAGTGAATCTATACAATACGCCATGTGGTGGTAACCTGTCTTCTTTATCACATTTAGTCACCTGCCCATCAGTGAAATAAGAAATATCTATTCAGAGGAAAATGCTACTACAAGACAGCACTATACAAGtggtttaacaaaaaaaaaaaaaaggaagtgaTCAACAGTTTGGTAGTATAACAATTATTCTCCTCCCAGCTGTGCAATAGAATAAGCTAATTGAGAGCAGGAACTATTTGGGCACTGCAAAATGCACACACTCTGCCCAACAAACAGCAGAGTTATACTGGGAATACATGATGGATCCCTATCTGAACACCTAGCTGAGAGCAAAAGGCTCCAGATATGGGACTGTGTTACCAACACCCTATGTAAACATGATAAACTATGAGAGCAACCACAATTTATGGCTAATGAGAGGGCGTTTCAAAAGCTTGGTGCAAAGCTCTTTagccaaaaagaaaaacatgcccTGCACAGCTCACTTTAAAATTGTGGATGGCACACCTCGTTTAAGGAACAGCTTCATTGCGCAAGGCTCACTCCAAAATTCAATCACAAATCCTCAGAACACTCAGTTTTTCCAAATACAATGTATATCATGTTTTGCTCTATAGAGCAGTAGAGTACTGATCGTTGGGTGTTGGACGCTGGGATTTTGAGGGGGTTGGGGACTGGGTATGAGTCCAAAAAAAAGGCGCTAAAGGAATGCAAAGTGAAGAGAGAGGAGTGGGAAAAGTTTTTAGATCAAGTCAGCCACATTCATGGGCATTTCCTCCACAGTGGTGTTGTAGAATGTCTCAATGTCCCGGAGCGTGCGCTTGTCATCTTCTGTAACCATGTTGATGGCAACACCTTTCCTGCCGAAACGACCACCACGCCCAATCCTAAGGAGAAAAGTACAAAATTATGAAGCATGATTGATACCTAGgagatttatttgtatataaagggcaaaatataaatacattcaaaAACTGTACTTGCCTGTGGATGTAATTTTCTCTGTTGGTGGGAAGATCGTAGTTGATAACCAGGGAAACCTGCTGTACATCAATGCCTCGAGCCAGCAGATCAGTGGTGATTAGCACACGACTGGAACCAGAGCGGAACTCCTTCATGATCAAATCTCGCTCCTTCTGGTCCATGTCCCCATGCaaagcagagactgtaaaatCTCTAGCATGCATCTTCTCAGTCAGCCAATCCACCTTCCGGCGAGTATTGATGAAGATAACAGCCTGCGTGATGGTCAAAGTCTCGTACAGGTCGCACAGAGTGTCAAGCTTCCACTCCTCCTTCTCCACATTAATGTAGAACTGACGAATACCCTCCAGGGTCAGCTCCTCTTTCTTGACTAGGATCCTCACAGGATCGCGCATAAATTTAGAGGTGACATCCAGCACTTCCTGTGGCATGGTGGCCGACAGCAGAATCACCTGAATGTCCGAAGACAACTTCTGGAAAATTTCATAGATTTGGTCCTTAAACCCTCGGCTCAACATCTCGTCAGCTTCATCCAGTGCAAACTGCTTGATGTGTCTGGGAGaGAGATACCGTCGGTTAAGCATGTCAAAAACACGCCCAGGAGTGCCCACAACAATGTGGGGCACATCTGCCTGCAACTTCTGAACTTCATTGCGGACATTGGTTCCACCGATGCAGGCGTGGCAGGTAGCGCCCATGTAGTCTCCAAGAGCAAGGACTACCTTCTGGATTTGTTGGGCAAGTTCTCTGGTGGGGGCCAGGACCATGGCCTGTGTTGCTTTCATCTCAATGTCAATCTGCTGCAGGATGGAAATGGCAAAGGTGGCAGTCTTCCCTGTGCCAGACTGAGCCTGTGCAATGACATCGTATCCCTTGATACAAGGGAGAATAGCCCTCTGCTGAATAGCAGAAGGTTTCTCAAAACCATAGGCATAGATTCCTCTGAGAAGATTCTCACGGAGGTTCATGTCATCGAAACTATCGACGACTTCCTTCCAGTTGCCCTCAATGACTCCATCTGGCTCCATGCCCTCGGGGCCATTGTCTCTAGGTCTATCCTCATGTTCAGCCGACATTATCACAAAGAACAGCACAACGGCGGAAATGTGTTAAATACGCCAAGGCACCGAGGCCTGAACAATTGTGATTGGAGGAGAGTCTCG
>TU196335
TTTTGACTTGTTAAAAAGAAATACctttatttaagagaattaaaataaatactatacAGAATCCAATGTAGAAAAAGTTTAATACACGGCTTCTGTTTGAAAAAGGTTAACAATCACATTcttaataaattcatttaaaaatagcactgACCAATGTAAACCCCACATCCCCACAAGACAGGCATTTCAACAAGCAGAAAAAAGTAACATTATAATCTCTATAGACTCAATCATTTGTAGTTTGGTCCTTTAAAGACCCCTCCAATATATTTTGGTGAGGTAGGTTACTGGAGCGACACTCCAATACATAAGGACTTAATACAGTGAATCTATACAATACGCCATGTGGTGGTAACCTGTCTTCTTTATCACATTTAGTCACCTGCCCATCAGTGAAATAAGAAATATCTATTCAGAGGAAAATGCTACTACAAGACAGCACTATACAAGtggtttaacaaaaaaaaaaaaaaggaagtgaTCAACAGTTTGGTAGTATAACAATTATTCTCCTCCCAGCTGTGCAATAGAATAAGCTAATTGAGAGCAGGAACTATTTGGGCACTGCAAAATGCACACACTCTGCCCAACAAACAGCAGAGTTATACTGGGAATACATGATGGATCCCTATCTGAACACCTAGCTGAGAGCAAAAGGCTCCAGATATGGGACTGTGTTACCAACACCCTATGTAAACATGATAAACTATGAGAGCAACCACAATTTATGGCTAATGAGAGGGCGTTTCAAAAGCTTGGTGCAAAGCTCTTTagccaaaaagaaaaacatgcccTGCACAGCTCACTTTAAAATTGTGGATGGCACACCTCGTTTAAGGAACAGCTTCATTGCGCAAGGCTCACTCCAAAATTCAATCACAAATCCTCAGAACACTCAGTTTTTCCAAATACAATGTATATCATGTTTTGCTCTATAGAGCAGTAGAGTACTGATCGTTGGGTGTTGGACGCTGGGATTTTGAGGGGGTTGGGGACTGGGTATGAGTCCAAAAAAAAGGCGCTAAAGGAATGCAAAGTGAAGAGAGAGGAGTGGGAAAAGTTTTTAGATCAAGTCAGCCACATTCATGGGCATTTCCTCCACAGTGGTGTTGTAGAATGTCTCAATGTCCCGGAGCGTGCGCTTGTCATCTTCTGTAACCATGTTGATGGCAACACCTTTCCTGCCGAAACGACCACCACGCCCAATCCTAAGGAGAAAAGTACAAAATTATGAAGCATGATTGATACCTAGgagatttatttgtatataaagggcaaaatataaatacattcaaaAACTGTACTTGCCTGTGGATGTAATTTTCTCTGTTGGTGGGAAGATCGTAGTTGATAACCAGGGAAACCTGCTGTACATCAATGCCTCGAGCCTAATAGGCAAATACAAAATCAAAGATGCTTAAGAACCAGACGGCTAGCCAATGCAAAGTGTACTTTGCACTTTTGCACTTATGATTAAAGTATGAGGATAAAGAATTCTGCAACAGAAGAATTTCTCCACAACTCACCAGCAGATCAGTGGTGATTAGCACACGACTGGAACCAGAGCGGAACTCCTTCATGATCAAATCTCGCTCCTTCTGGTCCATGTCCCCATGCTGTAAACCAATAATTAGTTTAGTTAGCGGTAAGCTTATAACTCCTGAAAATCACTGACCAACTTTGACCATTAATATTCTTGTGCCCATAGCATGAAACAGCCTTTGGCTCATAGATCTGAGTAGACTGGGATGAATATGGGCTATTCTCTCTTCCCCTACCAGATATAGGACTATGTGCCACTGACAGACACAACCTTGCCCAGATGATAAGGGTAGTAATAAGACTGTTACTGGCAAAGTTTTGGGGTAAAATTTTGTATGATGGATTGCTTTCTCACCaaagcagagactgtaaaatCTCTAGCATGCATCTTCTCAGTCAGCCAATCCACCTTCCGGCGAGTATTGATGAAGATAACAGCCTGCGTGATGGTCAAAGTCTCGTACAGGTCGCACAGAGTGTCAAGCTTCCACTCCTGTAATTGCAAAAGGATACTGTTAGTCAGATAATCAGTTTTATTCTCTCCTTCAATGTTAAAAGCGGTCCAACACACCATGCAGGTTATGATTAAGAACCACCACTAGATGGTGCCGTTTACATGACTTAAAGATTTAAGTCCTACCAGCTTCAAGCACTGAATATTAGAATGACAACCCAGCCCTgcaaaaatatttctaaaactGCCTTATTCACTTTAAAGTGAACTACTGAGATGCCACCATTTTGTTGCAGTGTCTAAAAACGCAGCACTAAATTTTTGGGCAGTCTGAATCCCAAAATGGTTCATAAACGTTTACAAATCAACCATTATCCATCATGTTAATTCAGCTGACTACAGCTAAACTCAAACATGTAGAGGACAGTGAATAGTGCAGTTTTGGAAACAGCTTTGGAATCACTGTGAGGCCCTAATGCAAGTACCTGTTCAAAAATTGTATTACTATAATTAGTTGTGTTGGagaataacattaaacattagaCAAGTTTGAGAAGCTCCTCACCTCCTTCTCCACATTAATGTAGAACTGACGAATACCCTCCAGGGTCAGCTCCTCTTTCTTGACTAGGATCCTCACAGGATCGCGCATAAATTTAGAGGTGACATCCAGCACTTCCTGTGGCATGGTGGCCGACAGCAGAATCACCTGTAGGAAAACAGAATATTAAAGTTCCTGCTTTAACTGCAACCCATTTAGTGTAACAAAACTAGCGCAATGTGTCCCAAACAAAGTGACTATGGTAATACTTCAGTAtaacaaagtacattttattgcTTATAGATGTGCTTTTGTCTACTGATATATAGTTGTGATAAGGGACAGAGTAACCCAGTCACGGTGGAGAACAGTAATTTCTCTACCAAAGAACTTGATTCCATTCCCAGCAGAGAGAGCTGGGGGGGAAGAGGGAACTTTGGCAAGCCCTGAACcattttaacaaataaacattGTCACATTGCGCGTCAGTACACATGCATGGATGGAAAAGCTTTACCTGAATGTCCGAAGACAACTTCTGGAAAATTTCATAGATTTGGTCCTTAAACCCTCGGCTCAACATCTCGTCAGCTTCATCCAGTGCAAACTGCTTGATGTGTCTGGGAGCTGAAAGAGGAATGTAGACATAAACAgaatgcaccaaaaaaaaaaaaaaaaaacgctcgtCAGCGTAGCAAGTTAAtttttgatttaaataaaatgtaaactaTGTGGGGGTCACCcacaaagtataaaaaaaaaaaaaagactggggTAATGCTGCGTTCAGGTCAATGAGGTCTGATCATGCCTCTGGAGACCTGTGGCCCCAAACGCACCCCCAACAGAACGTTGAAGAGCGGCCAGGAAGCACAGGGTACTACAGAGTCAGTTGACACGCATAAGGGTTCATCATTACAGCATTCAATCTCACTGAGCTCaccatttaggaaaaaaaaaaaaaaaaggataaagaaaaaaaaattgcttacaGAGATACCGTCGGTTAAGCATGTCAAAAACACGCCCAGGAGTGCCCACAACAATGTGGGGCACATCTGCCTGCAACTTCTGAACTTCATTGCGGACATTGGTTCCACCGATGCAGGCGTGGCAGGTAGCGCCCATGTAGTCTCCAAGAGCAAGGACTACCTTCTGGATCTAAACATGAACAGACACCAGCAAAGGTAtgtcaaaaaaagaaatctacAAGGGCCAGGCAAATCTGAACCTAACTGgtgtttacagaaaaaaaaaaaaaaaaaaatccatttagtCAGCAAACCAAGTAATGCTGTAACCCACCTCACAGCTTAAGAACTCAATGACTCACAACTGGTGGTAAATGATGAGTAACATAGCGGTGAGTCATGTTGAATATGTACCCATAGCATGAAACAGTCTTTATCTCACTGTACTGAGTAGACTGGGATGAATATGGGTAATTTCAATTTTCCCCTATCAGATATAGGACTAGGTGCCACTGACAGACACTGCCTTGCCCAGATGACAAGGGTCATTCTAAAACATTTGCGTCACCTCACAATGAGAACAGAACTACTCACGCATGTAACTGGATCTTACTTGTTGGGCAAGTTCTCTGGTGGGGGCCAGGACCATGGCCTGTGTTGCTTTCATCTCAATGTCAATCTGCTGCAGGATGGAAATGGCAAAGGTGGCAGTCTTCCCTGTGCCAGACTGAGCCTGTGCAATGACATCGTATCCTgtgaaaataaaagtcaaaattTAAGACAGGCCAAGACTGGCAAAATAAAGAAAGGCTTTCCATCAGCAGAAATCTACTGTAGGAACAGCTTGCAATCTGTACCCATACCATGAAACAGTCTTTTGCTCATAGTGGTGAGTAGACTGGGATGAATATGGGCTGTGTTTGATCTTCCCCTAACAGATATAGGAATCTACCACTAGCAGGCACTTCCTTGCCCAGATGATAAGGGAGgcacaacagtaaaaaaagtattggTGCACTTAACTCACAAGAGCACATGGTGACGCATGTGTGAATCGACCATACGTATATAAAAAGTTGACTATTCTACACAGAAATATTTTGTCTACGTACCCTTGATACAAGGGAGAATAGCCCTCTGCTGAATAGCAGAAGGTTTCTCAAAACCATAGGCATAGATTCCTCTGAGAAGATTCTCACGGAGGTTCATGTCATCGAAACTATCGACGACTTCCTTCCAGTTGCCCTCAATGACTCCATCTGGCTCCATGCCCTCGGGGCCATTGTCTCTAGGTCTATCCTCATGTTCAGCCGACATTATCACAAAGAACAGCACAACGGCGGAAATGTGTTAAATACGCCAAGGCACCGAGGCCTGAACAATTGTGATTGGAGGAGAGTCTCG

Function

symbol description
eif4a1a Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including immature eye; neural rod; neuromast; paraxial mesoderm; and somite. Orthologous to human EIF4A1 (eukaryotic translation initiation factor 4A1).
eif4a1b Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in immature eye; lens; and somite. Orthologous to human EIF4A1 (eukaryotic translation initiation factor 4A1).
eif4a1 Enables double-stranded RNA binding activity. Predicted to be involved in cytoplasmic translational initiation. Located in cytoplasm.

NR:

description
PREDICTED: eukaryotic initiation factor 4A-I

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196334 False 2471 lncRNA 0.44 10 28886240 28892998
TU196335 True 4912 TUCP 0.41 3 28886240 28892998

Neighbor

gene id symbol gene type direction distance location
tnk1 LOC108443979 coding downstream 15021 28847847 ~ 28871219 (-)
elp5 NA coding downstream 79602 28801839 ~ 28806638 (-)
ctdnep1 ctdnep1a,dulda,LOC108413724,LOC107659132,LOC107672750,LOC107747382,LOC107744461,LOC107599947 coding downstream 87852 28774668 ~ 28798388 (-)
LOC103039768 gabarapa,gabarapb,gabarap,gbrap,LOC105911381,LOC106577557 coding downstream 112606 28769389 ~ 28773634 (-)
LOC103039467 NA coding downstream 118495 28759326 ~ 28767745 (-)
mpdu1 mpdu1,mpdu1b,LOC107750562,LOC107754705,LOC107687039,LOC107593662 coding upstream 29867 28922865 ~ 28928901 (-)
LOC111194357 NA coding upstream 37651 28930649 ~ 28934894 (-)
LOC111194358 LOC108267896,LOC108443962,LOC107663253,LOC107561795 coding upstream 191008 29084006 ~ 29090325 (-)
trnat-agu_3 NA coding upstream 217804 29110802 ~ 29110875 (-)
LOC103041139 LOC108443978 coding upstream 307240 29200238 ~ 29207306 (-)
G145133 senp3b,LOC108267653,LOC108443968,LOC107593615,LOC107754702,LOC107687035 non-coding downstream 1180 28882660 ~ 28885060 (-)
G145090 slc1a1,LOC106943501,LOC106526470 non-coding downstream 60922 28755832 ~ 28825318 (-)
G145096 NA non-coding downstream 89616 28794135 ~ 28796624 (-)
G145081 NA non-coding downstream 227323 28656159 ~ 28658917 (-)
G145052 NA non-coding downstream 366493 28517464 ~ 28519747 (-)
G145138 LOC108443970 non-coding upstream 11686 28904684 ~ 28908103 (-)
G145250 ap1s1,LOC107666294,LOC105921790,LOC103148860 non-coding upstream 200834 29093832 ~ 29169919 (-)
G145285 NA non-coding upstream 447474 29340472 ~ 29343893 (-)
G145287 NA non-coding upstream 460644 29353642 ~ 29379789 (-)
LOC111194369 NA non-coding upstream 509068 29402066 ~ 29411991 (-)
G145101 NA other downstream 70106 28812741 ~ 28816134 (-)
LOC103030802 LOC103030802 other downstream 1810509 27055327 ~ 27075731 (-)
G144410 NA other downstream 3209921 25673184 ~ 25676319 (-)
LOC103041383 cj011,LOC103041383,LOC108436197,LOC108267333,LOC105908822,LOC106577738,LOC107752978,LOC107559952,LOC100331330 other downstream 3214700 25666280 ~ 25671540 (-)
G144310 rce1,LOC107683501,LOC107710076,LOC107679240 other downstream 3444023 25435138 ~ 25442217 (-)
G145141 NA other upstream 45995 28938993 ~ 28944061 (-)
LOC103030652 NA other upstream 1751397 30644395 ~ 30650306 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other upstream 2330449 31223447 ~ 31227578 (-)
G145899 NA other upstream 2590945 31483943 ~ 31486070 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 2606918 31499916 ~ 31502661 (-)

Expression


Co-expression Network