G41433


Basic Information

Item Value
gene id G41433
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2634103 ~ 2644385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47041
ATGTGAAGTAATCAGCCAATGTACCAAGAGCTATTAGGCTAAATGACAGTATGACATGAAATTATTTAACAAAATAATGAATATTTATTACTAATTTGGATGCATTTTACAGAAGACTACTTATGAAAGTTCGAATAAATATTAACAAAACAAACGCAAACCCCATTTATCAACAATTTGTGTTCTTTATTTCTTTTTATCATTCATGTAATAAAACAAAAAAATCACACTCACCCACACACATACATATATATAAAACAGTAAAGATTTCTAAACAGCACAAAGCTCCATTTGAAGCTCTATCCCTCACTTTGTACAAGTAAATAATAATTTTAACTTATTACAGTCAGAAAAACAAGAAGATACCATTGATGAGCCAACTATTTATCATTCAGATTCAAAGAAACCCCCAATTACAGCCATTGGTTGTTTCCATCACATTGACACTTAAGTTCTCTCCTGTATGGCAATGATTATCTCTATTTATGTGTTTCCAACATACTTAAGTCAGATACTCCAGTGAAGTGACCGTCTCATACAGACTCTTTCAGGAGGATACAACTGGGATCCTTCTTGGCCAAATCCTCTTTTTCAGGTACTCTTTTGGAATTTTTCCGTCCTAAACCTCTGTCATCCACATCCTGGATAGTATCAGGTAAAGGTTGTCCAAGGGTTTCTGGGAGAAAGAATGCGAAGATTCCACTGACAATTGGAGCCCCTCCATAGATAAAACCAGGTAGCCATGGGGAATCCTCTCCCAGAAGAAGCACCATGGGGGCCACCATTGCTCCAAACCGAGCCATCATGGACACCCATCCCATTCCGTTCTGACGGATGACCGTAGGATACAGCTCTCCAGAGTACAGATAACAGCAGCTGAATGACGCAGCCAAGCAACCCTTCCCAATCACTGCCAGACTGGTGCGTAACATTTGCAGGTCATAAGGCACCAGAAGATTAATGAGTATCATTACGCCAGCCAGTACAAGAGCTCCGCACTGAGATGGTCTTCGTCCTAACATGCTCATGGATATCGTAACAACAATTTTGGCTGGTATATCCACTGCTCCAAAGATGACCTGGATAAGATAAATGCTGACCCCAAATTTCTGCAGATCCATGGAGAGGCCGTAGTAGGCGAAGCTGGTTGAAAACCAGACTGCGCTAAGGCACACGGTGATGGTTCTCATAGTGGATGTGCGAAGGAGGTCTAGAGCACTGTAAGACCCCTTTGAACAGGCCATCTCTTTCTTCATGGACTCTTGCAACATCTCAAGGTTGATTTTATCGCCTTCTGCACGGCGTCCATTTATGCGAGCCACCGTTTTGAGGTTTTTTACTGCCTGCTCTGATTTCTTGGTCAGGACCAGCCAACGAGCAGACTCTAAGAACCACCATGAGTAGAGGAAGGATACATAGAAAGGCAGAGAGACAGCCAGTGTGAGCCAGCGCCAGTCTCTGATGCTGTAAGCTACGGCTGCCAGGATCAGCTGGCCTGTTGTGTAGCAGTAGCCTGTTCCTGTGCCCACCACCGTCCGCACACGCGTAGGGATCCATTCAACAATTAGAGAGAAGGAGTTGAGCACCACACCAGACAGGGCCATGCCACAGCAGACACGGAAAAGGCAAAACATGGTGAAGGAGGTGGAGAAGGCAGCACATGTTCCTCCAACCGCCATCATCAAGTTAGAAATCAGCAGTAAAATACGCCGGCCAAACCTGTCAGAAAGTCCCCCAAAAACCACTGCTCCCACAAGGACGCCTCCCATATAGGTAGTTTGACTCATTTGCTTTAGGGCACGGTGGTCACAAACCAAGTCCCACTCAGTAATAATAGTCGAGCTCATTTCTGTAATGTTGTAGTACCATCCATCCTCACAGCTCTGCATCTCTATCTCTTCCACACCCTCTTCCCATAGGCTCTCTGAACTATTGCTGTTTAGGAGCTGCCACTGAGGATGTACGTAGCGTCTGCAGCGTTCCGGTTTGCCGTTCTGGCCCAGGGGCACCGTTGCCCGCAGCACGTCCCCCATGGAGGACATTGAGAGGTTGGCGTGGGGGGCGCAGTGGTGCGGTGGCACAGCGGCTACAAAATTCTGCAGCAGGTTATGGCTGGCCATCATCAGGATGGGCATACTCAACATGGTGACATGCAGGATCTGGAAGCGTCCAGTGCTGCCCACCTGCTCCAGCAGGTCAGAAAAGGCCATGGCTCAGATGTCCACAACAACAGGTGAGGAATACAGTTTATAACCCAATGTTCTGGCTAGTGGGTTGTAAAATTTATCTGTTGTGACTTGAAGAATGTCCTGAACTTTCTCCCTAGAAAACAAATGGAACTAGAAAGTGATTCTGAATAGGAGAAATAAATAGAGAAACTGTTATGTGTTGTTGTATAATCAGCTCTTAAATTCCTCAGGCTTTTGGGTGGAAATACACCACAAGTTTGCTCTGGATTAGAAGGTCCACGTTTAAACCGCTTGTGGCACGAACAGACTTTTCCATGAGGTGCGGGAAGAGATGCCTCAGCTAGACTGAAGTTGTTGTGCTCCTTCTGGAATCCCTTGACTCGTACCTGCTGTGTCCTGAAGCTGGTCCAATGTCCAAGCCAGTGGGGTGCTGCTGTGAGGATCAGAGAACGACTCGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU47041 True 2648 lncRNA 0.46 11 2634103 2644385

Neighbor

gene id symbol gene type direction distance location
CI01000006_02616480_02616828 NA coding upstream 17264 2616480 ~ 2616839 (+)
CI01000006_02613864_02614742 NA coding upstream 19343 2613754 ~ 2614760 (+)
CI01000006_02531899_02588907 NRG2A coding upstream 44340 2531816 ~ 2589763 (+)
CI01000006_02490349_02491048 NA coding upstream 142985 2490349 ~ 2491118 (+)
CI01000006_02396895_02399927 CXXC5A, CXXC5 coding upstream 234152 2396468 ~ 2399951 (+)
CI01000006_02665949_02677083 RASGRP2 coding downstream 21564 2665949 ~ 2677215 (+)
CI01000006_02774064_02933983 NRXN2A coding downstream 129679 2774064 ~ 2933983 (+)
CI01000006_03016090_03016706 NA coding downstream 370752 3015137 ~ 3017314 (+)
CI01000006_03102358_03152576 NRXN2A coding downstream 457973 3102358 ~ 3152869 (+)
CI01000006_03164803_03183473 PCNX3 coding downstream 519804 3164189 ~ 3183719 (+)
G41482 NA non-coding upstream 1273 2632214 ~ 2632830 (+)
G41423 NA non-coding upstream 7917 2610231 ~ 2626186 (+)
G41461 NA non-coding upstream 188169 2445724 ~ 2445934 (+)
G41457 NA non-coding upstream 191127 2442612 ~ 2442976 (+)
G41453 NA non-coding upstream 196651 2437230 ~ 2437452 (+)
G41488 NA non-coding downstream 56222 2700607 ~ 2700826 (+)
G41494 NA non-coding downstream 65141 2709526 ~ 2710015 (+)
G41570 NA non-coding downstream 92751 2737136 ~ 2744797 (+)
G41547 NA non-coding downstream 332309 2976694 ~ 3053920 (+)
G41554 NA non-coding downstream 351385 2995770 ~ 3006315 (+)
G41170 NA other upstream 938282 1692065 ~ 1695821 (+)
G40768 NA other upstream 2141077 488407 ~ 493026 (+)
G40767 NA other upstream 2150768 360009 ~ 484185 (+)
G40772 NA other upstream 2154909 475465 ~ 479194 (+)
G41424 NA other downstream 1277 2645662 ~ 2660570 (+)
G41591 NA other downstream 191782 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 1084845 3734554 ~ 3736035 (+)
G41996 NA other downstream 2472821 5117206 ~ 5124149 (+)
G43896 NA other downstream 3125704 5770089 ~ 5771775 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location