G145457 (cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193)


Basic Information

Item Value
gene id G145457
gene name cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 30329458 ~ 30331665 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU196835
caataatattaatagtaataataatattaggaTATTAGACGATGCAAATAGGCGTTTACCCATGGCTTTCTAAAACGAGTGTAATTCCGAAGCCTCTTTGCGCACACAATCATCACGATTTTGCTTTACGGCCGGCAAACTTCACTTTTTGTGGACTACTGTAGCAATCTACTCTCTGTTAGAAGCAGCAGACTTCAGCTCGACTCGTCCGTTTATTAATAAGAGAAAGATCAGTGGCATGgtttatcaaaataaaagtccttcgAATGATGTGTGGAAGTGAGAGGGTTGAGAAAGGTCCTCCGTGAGGCTTCCACCAAGGTCCTAGTGGCCCTCCTGTTAAATCCCACTGCACCTCGCCGGCTTTAATAGTTCCTGTGAAGTGGCTTTGAAGAGTTGAAAGATAGTATGAAAGAGATTGACTGATGATTGGTACTCATCACCTCTGTTCATCaaccttttcctttctttttttttgtctttcgcATTATAGTGTTGCAGAGTGGAGCAGCAGGAAAAAAGGACAGTCGTCCTCAACAGAGGGCAGATAGCGCTCTGCTCCGACAGAAGAATACAAAAGCAACTCTCAAGCAGCAAATTTGGTGACCAGCAACCTCCTCTCCGCCCTGTAGTGACTGAATTCGCTCTAGTCACTCTAGAATTATACACTTTGCAGCCCCGCCCACTTTCCACTTTCTCATCCACTACCTCTTTACAGCCCCCGTCAGTCCAGCCAGTTACACGGTGGCGCCCAGCAACTCCTCTGTCTTGGCCATGATCTGGTTCTGGTTGGAGTCCAGGCCGAAGAACTTGACGCGCAGGCCATCGGTGGGATGGACCACGGGCACGGACACCATGCGGGAGAACGTCCGGCTGGCCAGCTCGAAGCGGCTCCCCCCGGCCAGCTCCACAGCCAGCAGCTTCAGAAAGAGGGTGGCCAGCTGCTTGCCCAGGCAGGAGCGGACCCCGCCCCCGAAGGGCAGGTAGTGGAAGCGGCCTTCGCGGTCCTCGCCGCGTTCTGCGCTGAAGCGGTCGGGGTCGAAGGCCTGGACGTCCTTGAAGACGGCCGAGGTGTCGTGAGTGTCGCGGATGCTGTACATGACGCTCCAGCCTTTGGGAATCTGCACAC

Function

symbol description
cyp26b1 Predicted to enable retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and retinoic acid catabolic process. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including brain; cranium; hindbrain neural keel; pectoral fin; and pleuroperitoneal region. Used to study craniosynostosis and osteochondrodysplasia. Orthologous to human CYP26B1 (cytochrome P450 family 26 subfamily B member 1).

NR:

description
cytochrome P450 26B1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196835 True 1129 TUCP 0.52 2 30329458 30331665

Neighbor

gene id symbol gene type direction distance location
dysf NA coding upstream 321601 29852681 ~ 30007857 (+)
cd99l2 cd99l2 coding upstream 710051 29600038 ~ 29619407 (+)
LOC103038770 cssa04h17orf49,clg07h17orf49,LOC103038770,LOC108434657,LOC105902403,LOC107720679,LOC108267800,LOC107561866,LOC107594707,LOC107668195 coding upstream 926507 29398006 ~ 29402951 (+)
ache ache,LOC108267799 coding upstream 938126 29372554 ~ 29391332 (+)
snapc2 NA coding upstream 982962 29340467 ~ 29346496 (+)
LOC103032659 NA coding downstream 220491 30552156 ~ 30558267 (+)
majin NA coding downstream 232718 30564383 ~ 30573161 (+)
gpha2 gpha2,LOC108434596 coding downstream 243433 30575098 ~ 30581054 (+)
arl2 arl2,LOC107749806,LOC107588185,LOC105895571,LOC107668402 coding downstream 324510 30656175 ~ 30661043 (+)
rcor2 rcor2,LOC107668449,LOC107588183 coding downstream 367956 30699621 ~ 30717886 (+)
G145448 NA non-coding upstream 101154 30227190 ~ 30228304 (+)
G145445 NA non-coding upstream 105434 30222219 ~ 30224024 (+)
G145427 NA non-coding upstream 208316 30120796 ~ 30121142 (+)
G145342 NA non-coding upstream 483219 29845245 ~ 29846239 (+)
G145341 NA non-coding upstream 484676 29842894 ~ 29844782 (+)
G145478 LOC108434636,LOC108267536 non-coding downstream 227342 30559007 ~ 30560602 (+)
G145483 NA non-coding downstream 256715 30588380 ~ 30608753 (+)
LOC111194374 NA non-coding downstream 262979 30594644 ~ 30648172 (+)
G145536 NA non-coding downstream 330091 30661756 ~ 30664878 (+)
G145555 naa40,LOC107749810 non-coding downstream 357238 30688903 ~ 30698376 (+)
G145438 NA other upstream 150734 30178204 ~ 30178724 (+)
LOC111194370 LOC108434654 other upstream 897432 29429025 ~ 29432026 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other upstream 1158888 29155725 ~ 29170570 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other upstream 1670537 28626044 ~ 28658921 (+)
G144671 NA other upstream 3120867 27206742 ~ 27208591 (+)
G145543 NA other downstream 337134 30668799 ~ 30672187 (+)
LOC103022860 LOC103022860 other downstream 580166 30911831 ~ 30914837 (+)
LOC103044823 NA other downstream 731774 31063439 ~ 31130023 (+)
G145711 chd3 other downstream 865553 31197218 ~ 31222334 (+)
G145748 mus81 other downstream 1020631 31352296 ~ 31354444 (+)

Expression


Co-expression Network