G145776


Basic Information

Item Value
gene id G145776
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31162519 ~ 31164685 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197243
AGGTCACCACAACAGCGGAGGTGTATCGTTTATTGTGGTCATCCACAGAAGAATTCATACAGCACTGACATGTTTAAAAGACTTTCACTATTCAGTAACATTCTACAAAGTGTATACAGTATTGGTTTCACCTTCTCATTCAGGTgatgttgtttattattttcttcaatGTAGACTGTACATGTAGATAAAGCAGTCTGCCAGCTTTTACCTCTTAAATTGACAGAGAGTGAGAATGAGTGTGCAAATTTGTCATCACAGCAAAAGGTGATTTACACTAAAGATTTGTTGCCACAGAATTAACCTTGAATCTCCAAACTTTACAGGATCAAAGTCCCAAACAAAGTCCCAAATCAATAGAAACACTTTTTCAATTATTTCCACGGACATTTTCAAATGAATGTCTTTAAATGAATTGCATTCAATGCAAACTGTTATTCAGTGCTTTTTGagcgtttctattggtccattccaATGGAAAGAACAACTGTGAGATTGTAATTAATGCAAAAATCCAGCATGGACATACAAGGTTTTTCCAAGGCAGCAACATACAAAtccacatacatacacacacaccattttaTATGCAAACACAGACTAGCCaaatcattaaaatgattaaaatgattcTACACTTTTCCATTGTTCATTTCAGCTGCTCCACTTCCCACTTCGGAACACTGTGTAGTTctaaaattacagactgtagtcaaTCTGTTTCGGTATTTATATAGAAATACGAAATTACCAAACCAAAATGAACTACTGAACCGCAAAGTGCAAGAGACACGAACTGTGGTCTTCACACACAATGTCAAGCTGTAACTTGTACAATAACTGCATACACACTGCAGCTGAAACAGCGCCAGGCTCTTGTCCCAGCACACTACTTGGCAGGCTccactaaaataaaacagtgctaTCTTGCTTAACAAGCTTTACTGTCCGTGAAGAACATCTTGAACATCTTCTAAGAGGAAAGATAAACAGTGCACAGTGCAATCGTGGCCCCATCTACACAAACAGATATAAATAGATCTGATCACCGCTTTAGTGTTGTGCCAGGTTTTAGATTATGTGGTATCAGAGGTGTAGCAGCAAAtgctgggccctgtacactctcaatgtcagtgggccacTATCCATGCCAGTATACAAGGaaggtgagagaaaaaaaaatctggattttcatgggcccttctccctactcgggccctgggtagtcaggtccacttttccccccactaccacaccCATGTGTGGTATTTTGGAACAGAACTCACCAAAATGTGCTGAACTCTGCTGGCCCCTGTTCCCTACACATAATGTAACTGAGGCTCAACAGTTAACTTAAAGTCAATATAAGAACAattttcagttaaaaaatatataataaatactaaaggggctttttgtattaatttctCAATCTTTCTATGAATTCTCTACACTGTAAACTATTTCTGACCTATTGTGATAAATCCAAGCGCAAATCTttaaatcttcaaaaaactATCAATATATCAATTGTGCTATTTATCTACCACCCTAACTACAAGAGGACAGTTATGGACATGGATTTTAGACTTAATAACAGTGCAAACATCAAGCACCAATATCATATTGTATTCTGTAAAcatctaaaaatgttaaacatgaCCACATGGACAGCATCCTTTTTTCATCCAGTCAACATATAAATGGAAACAAACATGTAACAGTACATCATGTTGTACAACAGTACACTATAAAATTAACTTCTATCTTTGGTTGTCATCAACACCTGAAAAACAGACACATCATGGATAAAACCATAAATGTGCCTCAGGATAAatcacatactcacacacacactaattatTGTACAGTTTTGTTTCTTGAGTGGTTATTTGTTGTTTCCCTGTGTTGGACCATAACCTGTAGCTTATTATTTCTGGGTAGGGCAGTAGGGATTGGCTGTACCCGTAATTGTTAAGGTTATCCCTGGGCCAAATGTTCTAGGGCGTCCCCCTCACAGCGCATGCAGTGGTAGCCCATGTCCGATGTCACGTCAAAGCAGCCTTGACTCAGGTAGAAATTTAGAGAGGGCTTGTTCCAATTCAGCACGGCAAAGTTTAGCTGAGTGCAACCGGCAGCCAGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197243 True 2146 lncRNA 0.39 2 31162519 31164685

Neighbor

gene id symbol gene type direction distance location
LOC103044025 LOC103044025,LOC108434612,LOC108268122,LOC107707061,LOC105907161 coding downstream 28065 31128240 ~ 31134454 (-)
LOC103022761 NA coding downstream 41125 31108966 ~ 31121394 (-)
LOC103024637 shroom4,LOC104951873,LOC107588210 coding downstream 267378 30823926 ~ 30895141 (-)
mettl12 mettl12 coding downstream 345625 30814603 ~ 30816894 (-)
LOC103045721 LOC108434626 coding downstream 369030 30786955 ~ 30793489 (-)
LOC103042997 chd3 coding upstream 12124 31176809 ~ 31222514 (-)
LOC103042161 dnajc3b,LOC108434608,LOC108267637,LOC107683555,LOC107707053 coding upstream 65762 31230447 ~ 31243063 (-)
LOC103041259 cldn15,LOC103041259,LOC108434589 coding upstream 79187 31243872 ~ 31248962 (-)
LOC103041559 fis1,LOC108434607,LOC107738082,LOC107597091,LOC107702049 coding upstream 88792 31253477 ~ 31258725 (-)
LOC111194379 NA coding upstream 143268 31307953 ~ 31310312 (-)
G145775 sat2,LOC104927601,LOC100692450 non-coding downstream 1518 31158374 ~ 31161001 (-)
G145759 NA non-coding downstream 16030 31145961 ~ 31146489 (-)
G145765 NA non-coding downstream 57123 31104754 ~ 31105396 (-)
LOC111194216 NA non-coding downstream 64689 31097201 ~ 31097830 (-)
G145671 NA non-coding downstream 121420 31040071 ~ 31041099 (-)
G145777 NA non-coding upstream 1612 31166297 ~ 31166748 (-)
G145798 LOC108434604 non-coding upstream 122821 31287506 ~ 31292389 (-)
G145895 NA non-coding upstream 316887 31481572 ~ 31481995 (-)
G145902 NA non-coding upstream 325138 31489823 ~ 31490380 (-)
G145917 NA non-coding upstream 396293 31560978 ~ 31561283 (-)
LOC103030652 NA other downstream 512213 30644395 ~ 30650306 (-)
G145141 NA other downstream 2218458 28938993 ~ 28944061 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other downstream 2269521 28886240 ~ 28892998 (-)
G145101 NA other downstream 2346385 28812741 ~ 28816134 (-)
LOC103030802 LOC103030802 other downstream 4086788 27055327 ~ 27075731 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other upstream 58762 31223447 ~ 31227578 (-)
G145899 NA other upstream 319258 31483943 ~ 31486070 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 335231 31499916 ~ 31502661 (-)
LOC103035326 sall2 other upstream 385844 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 706372 31871057 ~ 31885409 (-)

Expression


Co-expression Network