G145899


Basic Information

Item Value
gene id G145899
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31483943 ~ 31486070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197419
GAATTGGTTGTACTTACCTTGTAGCTATCCTCCTCATGCTCCCTAGAATCCCTTGAGACTGGACTGCTTTCAGACGTACTCTTGCGAGACGCACTGGAAGAACTTGAACCTCCACGTCTAGTGGTAGGAGCCATATATTCTGGACTGTTCTTTCGTCTGTGTCTAGATGTGGATTCTCTTTCTGGGGATTCACCATTGCCAGTTTGAGAACTTCCAGATTTTTTCCCCCTGACAGATTGGGTCTTTCGACTGTCAGCATAACCTGCTTTCTTTGCCTTGTCAGCTACTTTCTCTGCCGCCATCTTTTGCCTGGCTTCTTCTTCGGCACGCCTCATAGAGGACTGCAAACGGCACTGATGGACTGCTGCTTCCAGAGCTTTTAAAATCTCTTGCGTAACAGGTGGAAAGTCCAGTGACGCATCATCAAATGGAACAGACACTGATTGGGGTGTACCTTCATCTGAGAATTGCCTTTGGTCACAAGCCTGCAAAGTGCTACCAGTCTGATCCAGTTCAATTGATTTCAAGTCATCATGGAGTTGGGGCTCATTTTCAGCCATAGCATTCTGTGGCTTCAGGTCATCTTCCATCATCTCACTGACTAGAGCAGACTCCATTATGGGGACACTATGATGCTCTGTTTCTGAAACCAAAGTGTTCTCACCACTCGCTATATTACCAACAACCACCGTTTGTCCTTCTGTCGGAGAGTCTGCAGCATTATCGTTTACTAGCCTAGCGTTGACAGCCTCATCCTCTTCGACAGACATGGCCTCAACTTCGGTAGTAGTTTCGGTCTGAAGTTTATCACCACTTTCCATGCATGTTGTTTCATTACATTCAGCACTGTCGAAGAGTGCTTGTTCACCATGCTCAGTTATGGTGATTGGTGTGTTTTCACTATGCTCAGCTGTTTCCATGTCTGCTTTTTCACCATACTTTTCTGAATTTGTGGCCATTTTTTCACTATGCTCAGCTTTGTCTGTGACTTCACTTTGGTCAGTTGTGTCCATGTCTGCTTTTTCACCTTGCTCAGCTGTGTCTGTTTTCTCACTATGTTCAGTTgtgtctgtatctgttttttcaCTATGCTCAGTTGTGTCCGTAGACGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCGTGGACGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCTGATCTGTTTTTTCACTATGCTCACTTGAGTCCGTGGACGTTTTCTCACTACGCTCATTTGCGTCCATATCCGTTTTCTCACTATGCTCAGTTGTGTCCATGTCTTCTTTTTCACTTTGCTCAGTTGTGTCCATGTCTGTTTTTTCACCAAGTTCAGTTATGTCCACAGGGTCCTTTTCAGCATTCTCAAGTGTGTCCATGGTCATTTCTTCAGCATTCTCAGTTGTTTTTAGTTCTTTTTCAGCTTGATCTGTTGAACCAACAGGAAAGCCAACTTCCTCAGTGGTTCCTGCAGGCAAAATACCATCTCCTGACTCAGGCTCTTTGATCACCCTCACTATGTTTTCAGTTCCAGTGGTCTCGATTTTGTTTTCACTGTGAGGGACACTTTGACATGACTTCGtttcaataataaaacagtCCATTTCTGAGTCACTGCTTTCCAGCGCAGCTTTTTCGGTAGATTGTGTGTCCAACACATGGTCACTAAGTTTAACAGAGGGTGTTTCATCAAATAAAAGATCCTTTTTAGTTTCACTGTCTGATGCAGTGACTCCTGCTCCCATCTCTGCAGCAGATGGTTCAGTAGTACCATTAGGGTTCATCACAGACTTGGCTTCATTTCGAGTTACTTCTTTCACAGAACTGTCCTCCGCCTTAGTTTTGTCATCTTCAGTACGTGTTACTGTCGCCGCTGCAGGAACCTGTGTAACATTATATGCCCGAGGCTTGTTAGGTTTAGGCTTAGCACGAGCTTTAGTTCCCACTTTTGGAACAGGTTTAGCCCTAAAAGGGAAGAAATCAAAAGATTATGTCTCAGCATATC
>TU197420
GAATTGGTTGTACTTACCTTGTAGCTATCCTCCTCATGCTCCCTAGAATCCCTTGAGACTGGACTGCTTTCAGACGTACTCTTGCGAGACGCACTGGAAGAACTTGAACCTCCACGTCTAGTGGTAGGAGCCATATATTCTGGACTGTTCTTTCGTCTGTGTCTAGATGTGGATTCTCTTTCTGGGGATTCACCATTGCCAGTTTGAGAACTTCCAGATTTTTTCCCCCTGACAGATTGGGTCTTTCGACTGTCAGCATAACCTGCTTTCTTTGCCTTGTCAGCTACTTTCTCTGCCGCCATCTTTTGCCTGGCTTCTTCTTCGGCACGCCTCATAGAGGACTGCAAACGGCACTGATGGACTGCTGCTTCCAGAGCTTTTAAAATCTCTTGCGTAACAGGTGGAAAGTCCAGTGACGCATCATCAAATGGAACAGACACTGATTGGGGTGTACCTTCATCTGAGAATTGCCTTTGGTCACAAGCCTGCAAAGTGCTACCAGTCTGATCCAGTTCAATTGATTTCAAGTCATCATGGAGTTGGGGCTCATTTTCAGCCATAGCATTCTGTGGCTTCAGGTCATCTTCCATCATCTCACTGACTAGAGCAGACTCCATTATGGGGACACTATGATGCTCTGTTTCTGAAACCAAAGTGTTCTCACCACTCGCTATATTACCAACAACCACCGTTTGTCCTTCTGTCGGAGAGTCTGCAGCATTATCGTTTACTAGCCTAGCGTTGACAGCCTCATCCTCTTCGACAGACATGGCCTCAACTTCGGTAGTAGTTTCGGTCTGAAGTTTATCACCACTTTCCATGCATGTTGTTTCATTACATTCAGCACTGTCGAAGAGTGCTTGTTCACCATGCTCAGTTATGGTGATTGGTGTGTTTTCACTATGCTCAGCTGTTTCCATGTCTGCTTTTTCACCATACTTTTCTGAATTTGTGGCCATTTTTTCACTATGCTCAGCTTTGTCTGTGACTTCACTTTGGTCAGTTGTGTCCATGTCTGCTTTTTCACCTTGCTCAGCTGTGTCTGTTTTCTCACTATGTTCAGTTgtgtctgtatctgttttttcaCTATGCTCAGTTGTGTCCGTAGACGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCTGATCTGTTTTTTCACTATGCTCACTTGAGTCCGTGGACGTTTTCTCACTACGCTCATTTGCGTCCATATCCGTTTTCTCACTATGCTCAGTTGTGTCCATGTCTTCTTTTTCACTTTGCTCAGTTGTGTCCATGTCTGTTTTTTCACCAAGTTCAGTTATGTCCACAGGGTCCTTTTCAGCATTCTCAAGTGTGTCCATGGTCATTTCTTCAGCATTCTCAGTTGTTTTTAGTTCTTTTTCAGCTTGATCTGTTGAACCAACAGGAAAGCCAACTTCCTCAGTGGTTCCTGCAGGCAAAATACCATCTCCTGACTCAGGCTCTTTGATCACCCTCACTATGTTTTCAGTTCCAGTGGTCTCGATTTTGTTTTCACTGTGAGGGACACTTTGACATGACTTCGtttcaataataaaacagtCCATTTCTGAGTCACTGCTTTCCAGCGCAGCTTTTTCGGTAGATTGTGTGTCCAACACATGGTCACTAAGTTTAACAGAGGGTGTTTCATCAAATAAAAGATCCTTTTTAGTTTCACTGTCTGATGCAGTGACTCCTGCTCCCATCTCTGCAGCAGATGGTTCAGTAGTACCATTAGGGTTCATCACAGACTTGGCTTCATTTCGAGTTACTTCTTTCACAGAACTGTCCTCCGCCTTAGTTTTGTCATCTTCAGTACGTGTTACTGTCGCCGCTGCAGGAACCTGTGTAACATTATATGCCCGAGGCTTGTTAGGTTTAGGCTTAGCACGAGCTTTAGTTCCCACTTTTGGAACAGGTTTAGCCCTAAAAGGGAAGAAATCAAAAGATTATGTCTCAGCATATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197419 True 2062 TUCP 0.44 2 31483943 31486070
TU197420 False 2029 TUCP 0.44 2 31483943 31486070

Neighbor

gene id symbol gene type direction distance location
tkfc tkfc,LOC107094664 coding downstream 66237 31407362 ~ 31417706 (-)
LOC103037388 LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467 coding downstream 78585 31386254 ~ 31405358 (-)
LOC103038032 NA coding downstream 99634 31375693 ~ 31384309 (-)
ovol1 ovol1,LOC103038355,LOC108434587 coding downstream 115247 31361438 ~ 31368696 (-)
mus81 mus81 coding downstream 124731 31350210 ~ 31359212 (-)
LOC103021832 NA coding upstream 26245 31512315 ~ 31517985 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding upstream 42532 31528602 ~ 31546260 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 80848 31566918 ~ 31572825 (-)
LOC111194360 NA coding upstream 106221 31592291 ~ 31594387 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding upstream 156254 31642324 ~ 31655109 (-)
G145895 NA non-coding downstream 1948 31481572 ~ 31481995 (-)
G145798 LOC108434604 non-coding downstream 191554 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 317195 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 319258 31162519 ~ 31164685 (-)
G145775 sat2,LOC104927601,LOC100692450 non-coding downstream 322942 31158374 ~ 31161001 (-)
G145902 NA non-coding upstream 3753 31489823 ~ 31490380 (-)
G145917 NA non-coding upstream 74908 31560978 ~ 31561283 (-)
LOC111194380 NA non-coding upstream 99002 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 113426 31599496 ~ 31605450 (-)
G145937 NA non-coding upstream 138658 31624728 ~ 31626952 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 256365 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 833637 30644395 ~ 30650306 (-)
G145141 NA other downstream 2539882 28938993 ~ 28944061 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other downstream 2590945 28886240 ~ 28892998 (-)
G145101 NA other downstream 2667809 28812741 ~ 28816134 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 13846 31499916 ~ 31502661 (-)
LOC103035326 sall2 other upstream 64459 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 384987 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1614227 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2299025 33785095 ~ 33785421 (-)

Expression


Co-expression Network