G145917


Basic Information

Item Value
gene id G145917
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31560978 ~ 31561283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197442
tttaaccagctatcagaaacatatcatcacagttgaagtggttagcctatcgttacctttcttttagaaaaatctccgtatatccatatctgttttaaaatcagctgaagctgctgcgtcccgatcccgctgctaaatctcacagcgagggggcggggcttccccaacagcaaactgcctctgctccgcgcgccgcaaaaccagcaagctgattggctgtttctactgagaggcgtgacttaatacctgaaccggctccgtgattggtccggtctgtctcctcattaatagtacagctgacctgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197442 True 306 lncRNA 0.49 1 31560978 31561283

Neighbor

gene id symbol gene type direction distance location
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding downstream 14718 31528602 ~ 31546260 (-)
LOC103021832 NA coding downstream 42993 31512315 ~ 31517985 (-)
tkfc tkfc,LOC107094664 coding downstream 143272 31407362 ~ 31417706 (-)
LOC103037388 LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467 coding downstream 155620 31386254 ~ 31405358 (-)
LOC103038032 NA coding downstream 176669 31375693 ~ 31384309 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 5635 31566918 ~ 31572825 (-)
LOC111194360 NA coding upstream 31008 31592291 ~ 31594387 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding upstream 81041 31642324 ~ 31655109 (-)
sh3tc1 sh3tc1 coding upstream 95551 31656834 ~ 31678546 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 147920 31709203 ~ 31716725 (-)
G145902 NA non-coding downstream 70598 31489823 ~ 31490380 (-)
G145895 NA non-coding downstream 78983 31481572 ~ 31481995 (-)
G145798 LOC108434604 non-coding downstream 268589 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 394230 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 396293 31162519 ~ 31164685 (-)
LOC111194380 NA non-coding upstream 23789 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 38213 31599496 ~ 31605450 (-)
G145937 NA non-coding upstream 63445 31624728 ~ 31626952 (-)
G145956 NA non-coding upstream 94572 31655855 ~ 31656261 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding upstream 142011 31703294 ~ 31704834 (-)
LOC103035326 sall2 other downstream 2517 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 58317 31499916 ~ 31502661 (-)
G145899 NA other downstream 74908 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 333400 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 910672 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 309774 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1539014 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2223812 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2668637 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3843615 35404898 ~ 35435707 (-)

Expression


Co-expression Network