G145929 (acox3)


Basic Information

Item Value
gene id G145929
gene name acox3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31599496 ~ 31605450 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197458
GTGTTGCAGCAAGCTAAGTAGATAGTTGCTGGTCTGTTGCAGTAGGACATTGTTATCCCCCTCGTAGGTGCAGTTTGGGTCGTTGTCATCGCGGAAGTCTCCAAGACGGTTCATCGCCAGGTATCCATGTCCTCCACAGGCCTCACGGCACTCCTGAATTCCTCGCTGGGCAGTCCACGATCCCAGAGGTTTACTGGAGCAAGACATAGCATGGATCTCTCTACCTAGCTCAGCcTGTCTGTCACTGCTGTCCTTCATGAAGAGGCCAATTTGGAACTCCACAAAATTGCTGAAGAAGGATTTGGAGAAGAAATCTAGTGCATAGACAGCTGCTAAATATGGAATGAGGCGCCATTGCTGAAGCTGATACTCCAGTACAGGGATCTCCTCATCCTCTCTAGGCCCAAACTGACGCCGAGTGGCTGAGAAACGCACAGCAACAGTCATGGCCAACTTCAGATTCACCACAGCCATTCTTGTAATGGACACTCTGCCTCCAGACAATGCTCCCAGAGAAGCCCCAAAACGCTTATTAGGGTCCTTAAAAGGAGTCACATAACGTCCATCAGGCGTCACATCTCCAGTTCTATTGAGTAGATTTTCCCGGGGGATTCTGACATTGTGAAAAATTGCAAAACCATTGTCCAGTCCATTTTGTCCCAGTTTCTTTCCCATGTCTCCAACCATCACTCCTGGCATTGCCAGCAATGTCTTGGGATCCCTGACCTGAACAACAAAAGAGTGCAGCCCATAGCAGACTCCATCAGGTGTGTAAAGTTGAGCAAACACTACAGAATGTGTTGCAGTTTTTCCCAGGTTCCCCACCCAGAATTTTGCTGCTTCAAAATCAGGAGTGTTTATTACAAACTCCTGGGTGCTGGGGTCATAATTGGCTGTTGTCCTCATGGCTCTCGTGTTGCTACCATGGCTTAGTTCAGTCAGTGAAAAGCAGCCAAAAGTcttCATGTGTTCAATGTCCTGCACAAATCTATGGTGCCTCTGAGATCCAGAATTAGCCACTGTCCCTCCAAACatCCCTTTGTTGAGGAAAAATTTGGCACCCAAAGACCAGTCATACATCCCCAGACAGTCGTTGAGGACGGTCACCTTCCAGGGACTCTGCATCATTTCATCCTGCGACAGGAAGTTGTACCTAAACAGCTGCTTGCAGCGGCGGAAAGTGAGTTCCCTCTTCTGCTCCACAGGAACATCTTCACCCGCCTGCCTTGCAAAAAGCGGGTCGTTCTCGAGCGTCCGAAAAACATA
>TU197459
CCTTAAAAGGAGTCACATAACGTCCATCAGGCGTCACATCTCCAGTTCTATTGAGTAGATTTTCCCGGGGGATTCTGACATTGTGAAAAATTGCAAAACCATTGTCCAGTCCATTTTGTCCCAGTTTCTTTCCCATGTCTCCAACCATCACTCCTGGCATTGCCAGCAATGTCTTGGGATCCCTGACCTGAACAACAAAAGAGTGCAGCCCATAGCAGACTCCATCAGGTGTGTAAAGTTGAGCAAACACTACAGAATGTGTTGCAGTTTTTCCCAGGTTCCCCACCCAGAATTTTGCTGCTTCAAAATCAGGAGTGTTTATTACAAACTCCTGGGTGCTGGGGTCATAATTGGCTGTTGTCCTCATGGCTCTCGTGTTGCTACCATGGCTTAGTTCAGTCAGTGAAAAGCAGCCAAAAGTcttCATGTGTTCAATGTCCTGCACAAATCTATGGTGCCTCTGAGATCCAGAATTAGCCACTGTCCCTCCAAACatCCCTTTGTTGAGGAAAAATTTGGCACCCAAAGACCAGTCATACATCCCCAGACAGTCGTTGAGGACGGTCACCTTCCAGGGACTCTGCATCATTTCATCCTGCGACAGGAAGTTGTACCTAAACAGCTGCTTGCAGCGGCGGAAAGTGAGTTCCCTCTTCTGCTCCACAGGAACATCTTCACCCGCCTGCCTTGCAAAAAGCGGGTCGTTCTCGAGCGTCCGAAAAACATA

Function

symbol description
acox3 Predicted to enable fatty acid binding activity; flavin adenine dinucleotide binding activity; and pristanoyl-CoA oxidase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA oxidase and lipid homeostasis. Predicted to act upstream of or within fatty acid beta-oxidation. Predicted to be active in peroxisome. Is expressed in liver and male organism. Orthologous to human ACOX3 (acyl-CoA oxidase 3, pristanoyl).

NR:

description
PREDICTED: peroxisomal acyl-coenzyme A oxidase 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197458 True 1266 lncRNA 0.49 10 31599496 31605450
TU197459 False 727 lncRNA 0.48 6 31599496 31602665

Neighbor

gene id symbol gene type direction distance location
LOC111194360 NA coding downstream 5109 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 26671 31566918 ~ 31572825 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding downstream 53236 31528602 ~ 31546260 (-)
LOC103021832 NA coding downstream 81511 31512315 ~ 31517985 (-)
tkfc tkfc,LOC107094664 coding downstream 181790 31407362 ~ 31417706 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding upstream 36874 31642324 ~ 31655109 (-)
sh3tc1 sh3tc1 coding upstream 51384 31656834 ~ 31678546 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 103753 31709203 ~ 31716725 (-)
trnae-uuc_21 NA coding upstream 451347 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2227884 33833334 ~ 34001620 (-)
LOC111194380 NA non-coding downstream 8520 31585072 ~ 31590976 (-)
G145917 NA non-coding downstream 38213 31560978 ~ 31561283 (-)
G145902 NA non-coding downstream 109116 31489823 ~ 31490380 (-)
G145895 NA non-coding downstream 117501 31481572 ~ 31481995 (-)
G145798 LOC108434604 non-coding downstream 307107 31287506 ~ 31292389 (-)
G145937 NA non-coding upstream 19278 31624728 ~ 31626952 (-)
G145956 NA non-coding upstream 50405 31655855 ~ 31656261 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding upstream 97844 31703294 ~ 31704834 (-)
G146002 NA non-coding upstream 113154 31718604 ~ 31783241 (-)
G146004 NA non-coding upstream 131347 31736797 ~ 31739846 (-)
LOC103035326 sall2 other downstream 41035 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 96835 31499916 ~ 31502661 (-)
G145899 NA other downstream 113426 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 371918 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 949190 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 265607 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1494847 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2179645 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2624470 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3799448 35404898 ~ 35435707 (-)

Expression


Co-expression Network