G145956


Basic Information

Item Value
gene id G145956
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31655855 ~ 31656261 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197501
TTTTTACAAAGTGCTGAAAATGACGGACattacaccttcaaataaacaaGGTCACGGCTGGTGAAGTCTTGACAGCTTGACCTGAACTGCTCTtctctctccaaacaaacagcGAAAGCTAAAGCTGTGATTATTCCAAGTGTGTGTAGTCTTCATGTCCTCATGCATGTTAAAAAGGGAAAGGGATCAACATCTGTAGCCATGGCCTGAGTCTTACAGATGGACCATAAAAGGGCCTGTGGCAGATCAGACACGAATTACTTAACAGCTGAAACCTGCATATGGTGCTAAACTGCCAAAGACAACAGACCAGCACTGGATCTGCCTCATTTATAACTGTTTCAAGAAAAGGAAACCTGTGAAATGTCCTTGTTACTTTTTTCCAGTGGAAAAAGAAAGTATAACAC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00120 Primary bile acid biosynthesis
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko04146 Peroxisome
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU197501 True 407 lncRNA 0.42 1 31655855 31656261

Neighbor

gene id symbol gene type direction distance location
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 746 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 61468 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 83030 31566918 ~ 31572825 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding downstream 109595 31528602 ~ 31546260 (-)
LOC103021832 NA coding downstream 137870 31512315 ~ 31517985 (-)
sh3tc1 sh3tc1 coding upstream 573 31656834 ~ 31678546 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 52942 31709203 ~ 31716725 (-)
trnae-uuc_21 NA coding upstream 400536 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2177073 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2423993 34080254 ~ 34088604 (-)
G145937 NA non-coding downstream 28903 31624728 ~ 31626952 (-)
G145929 acox3 non-coding downstream 50405 31599496 ~ 31605450 (-)
LOC111194380 NA non-coding downstream 64879 31585072 ~ 31590976 (-)
G145917 NA non-coding downstream 94572 31560978 ~ 31561283 (-)
G145902 NA non-coding downstream 165475 31489823 ~ 31490380 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding upstream 47033 31703294 ~ 31704834 (-)
G146002 NA non-coding upstream 62343 31718604 ~ 31783241 (-)
G146004 NA non-coding upstream 80536 31736797 ~ 31739846 (-)
G146003 NA non-coding upstream 81435 31737696 ~ 31739112 (-)
G146005 NA non-coding upstream 100839 31757100 ~ 31757658 (-)
LOC103035326 sall2 other downstream 97394 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 153194 31499916 ~ 31502661 (-)
G145899 NA other downstream 169785 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 428277 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1005549 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 214796 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1444036 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2128834 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2573659 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3748637 35404898 ~ 35435707 (-)

Expression


Co-expression Network