smim20


Basic Information

Item Value
gene id smim20
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31717142 ~ 31719051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197509
ttaggttagctaagctagctacctgtctgttctgtctttcTCAAGGTCCAGACATGTCGAGAAACCTGAGAATAACACTCATATTCGGGGGCTTCGTAACCGCAGTGACTGCAGCTTTTTACCCGATATTCTTCCACCCTCTTTCTCACAAAGAGGAGTACAGGGAGATCCAGAAAATCAACCGAGCTGGAATCAATCAAGCAGATATTCAGCCTGCTGGAGTGAAGGTCTGGTCAGATCCATTCAAACCGAAGTCATGATGTGATGCAAGGCAGTAGCAGAAACAGATGGGAAAAGAGATTCATGAACATAAAGACATCATTGCAAATGTCTGGGACATTATGCACTTCTCACTTCAGTGTGACTGAATGAACCATTTAACATGCAAGCGAGTGAAAGAAGCTTATTCCCTGGAAGACTCCTAATTTTCCCCTGTTTAGTTTTCTTGGCTGTAACACGTTAACACTCATTCAGTCTTTGATAGCTGGCCTGTGTATTACAGGAAAAATGGTACAATTCTGGAGTAAGGCCATCATCTGGAAAAAGTTacattgggggaaaaaaatcagtaatatgtaATACCTGCCACAATATTGTGTCATTCATTGTCATATGTTGTAATGTATAGAATGATTTATTCctgaatgaaataaaatgtgatttttggaA
>XM_007248004.3
TGAATGGGTTAATTTCCGAGTGCTGAACTTGACCCGGATAgagttaggttagctaagctagctacctgtctgttctgtctttcTCAAGGTCCAGACATGTCGAGAAACCTGAGAATAACACTCATATTCGGGGGCTTCGTAACCGCAGTGACTGCAGCTTTTTACCCGATATTCTTCCACCCTCTTTCTCACAAAGAGGAGTACAGGGAGATCCAGAAAATCAACCGAGCTGGAATCAATCAAGCAGATATTCAGCCTGCTGGAGTGAAGGTCTGGTCAGATCCATTCAAACCGAAGTCATGATGTGATGCAAGGCAGTAGCAGAAACAGATGGGAAAAGAGATTCATGAACATAAAGACATCATTGCAAATGTCTGGGACATTATGCACTTCTCACTTCAGTGTGACTGAATGAACCATTTAACATGCAAGCGAGTGAAAGAAGCTTATTCCCTGGAAGACTCCTAATTTTCCCCTGTTTAGTTTTCTTGGCTGTAACACGTTAACACTCATTCAGTCTTTGATAGCTGGCCTGTGTATTACAGGAAAAATGGTACAATTCTGGAGTAAGGCCATCATCTGGAAAAAGTTacattgggggaaaaaaatcagtaatatgtaATACCTGCCACAATATTGTGTCATTCATTGTCATATGTTGTAATGTATAGAATGATTTATTCctgaatgaaataaaatgtgatttttggaA

Function

NR:

description
small integral membrane protein 20

GO: NA

KEGG:

id description
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU197509 False 669 lncRNA 0.40 3 31717185 31719051
XM_007248004.3 True 712 mRNA 0.41 3 31717142 31719051

Neighbor

gene id symbol gene type direction distance location
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 9187 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 47013 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 97610 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 132169 31572241 ~ 31584973 (+)
ccnb1ip1 ccnb1ip1 coding upstream 150404 31563778 ~ 31566738 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding downstream 54453 31773504 ~ 31859657 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 215672 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2293431 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2309399 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2396090 34115141 ~ 34170245 (+)
G145875 NA non-coding upstream 67257 31648526 ~ 31649885 (+)
LOC111194381 NA non-coding upstream 84217 31627040 ~ 31632925 (+)
G145868 NA non-coding upstream 90180 31624722 ~ 31626962 (+)
G145859 ttc5,LOC107738047 non-coding upstream 149260 31566937 ~ 31567882 (+)
G145854 NA non-coding upstream 165033 31550533 ~ 31552109 (+)
G145966 NA non-coding downstream 17745 31736796 ~ 31739792 (+)
G145968 NA non-coding downstream 19731 31738782 ~ 31739107 (+)
G145969 NA non-coding downstream 38046 31757097 ~ 31757667 (+)
G145974 NA non-coding downstream 69894 31788945 ~ 31848894 (+)
G146034 NA non-coding downstream 288675 32007726 ~ 32012637 (+)
G145748 mus81 other upstream 362698 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 494808 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 587119 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 802305 30911831 ~ 30914837 (+)
G145543 NA other upstream 1044955 30668799 ~ 30672187 (+)
tbc1d19 tbc1d19,LOC107660707 other downstream 173475 31892526 ~ 31926550 (+)
trnae-uuc_22 NA other downstream 352263 32071314 ~ 32071563 (+)
G146104 NA other downstream 893074 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 1160639 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 2348530 34067581 ~ 34077975 (+)

Expression


Co-expression Network