tbc1d19 (tbc1d19,LOC107660707)


Basic Information

Item Value
gene id tbc1d19
gene name tbc1d19,LOC107660707
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31892526 ~ 31926550 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197539
aaagaatcaaaagcttactggtgtgtgttttttgccaAAATGTTATTGTGAAATTAGACTTAAGTTTGTCTTTTgatcaaaaagttttaaatatgaATTACCCCACACTTGCAGATACCCTGAAAAATACATCTAAGAATTTCTGTCTCAAGATATATTTGTGAATCCAGCCCCAGATATCTTATTTAAatcatttgtatttaaaatgcatGTACTTCTTTCTGCTTTGCAGAAGGCTTCTTTAATTGATTCCGTAGATGAACCacaagttaaataaactctCACCTGTGTCAGTTTATTATTACACTCTGTGTGCCAGGCATTTGTAGGGCTTGTACTGATTATGATATGTGCCTCAGAGCAAACAGCCTTCCCACTCTGTTTTAATTTCAATAATTGTTTTACATGCACATACATACTGGTTTGACTGAGGATTTTGTCCACATTTGTCTGTATTAAATGATGTAACACACCCGCCTCTTAAAAGGTGCTGTTATGtaacaaccaaacaaacaaagagtaGGAGACTAATGGGAATTTGAAAggactgttgtttttttatgttgtatacATGTTGATTTATTCCTTGTTTTtatgtgtaaaacatttttcacatgCCAATAAAATCAGATCTTCCTTTGGAACACAGCCTTTTTACTTATGGTTTTTATGGTACTTATGTATATGTAATGTATTTGTTCTCCA
>XM_007248000.3
GCGGGTGCTCCGTAGTTGCTAAGATACGGCGCTTCATCGCTGGATGCTGAGCTGCCAAATGAGGGTAAAGCTGTTTACATGAGTCAGTTTTACCGCAGTGAGCCGCTGTAATGATGGAGGAAGGAGCAGACCTCTCTGTCACCATCGCTCAGATCGTCCACAGACTGAAAGGAGCTCATTTACACTCACAGCTCGAGAAACAAGCCAGAGAATGTTTACACAGGCCGGAGATAAAGCTAGAATCGCTGAAAGAAGACGTGAGGAGTTTCCTGAAGGCTTCAGgtTGGGAGAGGAAGTTGCAGAATGCAGTCTACAGAGAACTGCACATATTACCTCCTCCTGGGCACCCTGCAGCTCCCCCTGAGCACACTAAAGAGCCCCTGGTGTACATGCGCAAGGCCCAGGCGAGCTGGGAGAAGAGGATACTAAAGAGTTTGAACAGTATGTGCACTGAGTTGGGAGTTCCACTGGCACGGAAGAGGCCCGTTTCAGAACAGAAAGAGCTGACAAACAAATGGAATGAGATGGGCACAGATGAACCAGATCTGAGCAAGTTCAGGCCTGTCTATGCCCCCAAAGACTTCCTCGAGGTTTTAATTAGTCTGAAGAACCCCAATTATGACTGCAGAGAGGGACTTACTGCCAATAGCCACTGGGGACTAATTCAGATCTCCCTCAACGTGCGTGATATCCCACAGATGAGAGAGGCTTATCCAGAGCTCAGTCTGACGTGCAGCCAGCTCGGCATAGATGATCACGCACACATCCCCCCAGATTTGTTTGAAAGCGAACACATTCGTATCGGGaagaaagtggtgagTGAGCAGGACAGTGCGGCTGCTCAGCAGTACAGCAGACAGGGCTGTCCCACTGGCTTCAGAGCTCAGCTATGGGCTCTGATCCTCAATGCTACGAATGAACCTGAGGACATCATGCATTATGAGCAGCTGAAGGCTGCAGTCATACACCATGACCTGCTGGTGGACAACCTAATATATaagGATGTGAAACTGACCGCAAGTAATGATGACTATTACTTTGTGTTTGAAGACTTTCTGTATCAGGTCCTGCTGTGCTTTTCTCGAGACACTGCTGTTTTGGAGCATTTCAGCTACAACAGCGCCACCCCTCCCAAGTCCTACATCCAGGgcAAAACTGGGGCAGAAGAGTTCACTGTTGTCTATCCTCCAAATGGAGTTATCCCCTTCCATGGCTTCTCAATGTACGtgtctCCACTGTGTTTCTTGTACAATGAGCCGTCTAGGCTGTACAGCGTATTTAGAGAGATGTATGTGCGCTACTTCTTCAGGCTGCACTCTATATCCTCCTCCCCTTCAGGTATAGTTTCTCTTTGCTTGCAGTTCGAGAGGCTTCTTCAAAACCACCTTCCTCAGCTCTTCTATCATTTGCAAGCGATCGGAGCTCAGCCACTGCGTATCGCCTTTAAGTGGATGGTTCGCGCATTCTCAGGGTACCTTTCCACTGACCAGCTGTTGTTGCTATGGGACCGTATCCTTGGCTACGACTCCTTAGAGATAGTTGCAGTCCTGGCGGCCGCTGTCTTCACCTTCCGAGCTGAAAATCTGATGGAGGTGACATCACTGGCTTCAGctgagGCCGTCCTCGCTGATCTCTCGACCCTAAAGGTCATGCCGCTGCTGCAGGTATTTCTCTTTGCCTAAGTTATGTGCATGTGGGTGTTGCCCCCCAAGCGGTCTGCCAAGCTGTGCATGGCCGTGCCAACTAAGTCATTTGCAGCAACTGATAACCTTTAAAATGTAACAAGATAATAAGTGAAAACATAAGCAGAACACAAGCAACATTCGACACGCCACCGAAACAAAAGCTTGACTTTACAGTTTTATCAGATAGGCTTAATGCCAAATCAGGCCAGCAagtactataatatatattctgCTCATGTTCAGGTTTTAAAATATGCCAGTCTTTAGATGGTGTCAAATTGCACACGCGAGTATTAGTAATAAGTGCATTAATAACTgctgttaattaattattatgcaTTTGTAGAAATAATATGCTGCTCTTGCCAATTCAATGTGCACCACTGAAAtgcttttaaatcatttatatatcATGCTGACCCAGCAGTTGTATGCCTTATCAACAGTACATTACAAGCATTCAAAGCTGAATGAAAACAAGTGCTGTAATACATAAAACAGTCTGGGGCTTGATTCACAAAATATCttctaattaaaaaatgtaggtAGACACGGAGAATGTTATAAATATTTCAagtctcaatttttttatatatataattttatcaaGAATCTCATCGCTGTTTTCGTATTAATGCCATGTGTAACAGTCTTTCATTCTGCATTTGACTGCATAAAATACAAtgcaaaatgtattaaaaatgttagttaAATCCATGCAGCTAAGAGAAAAATGTTAGAAAATCAGAATCAAAATAAGTGatcaaaaaatttaattaatttcaaaaAGTGCTAGAAGTAAATTTCTTTATATAGAGAGTAGCTTTGTATCTTATTAAATTAgaaatatttctaattttagaAATACCTGTcagaaaaatattgtttttagatgtttttcttATGTGAAAATCTTGTTTGATTAAAAAAGGCTTTAATTCttcttaaaaagacttaaaccCATTTTTCAAAGGTCTTACTTTGGTTTTGTTTTCCAAATTATATGAATGTTAGTTATCTAGCTTATTACTTTAATGTCAGCCTGTAGTAAATTTAATAAAGACTGATTAGATAACCCAAATTTTGCACTAGATTCTATTTTTAGAGTTCAAAACATAATTTATGTTCCTTTGAAATATTAATTtaacagggaaaaaaaagaatcaaaagcttactggtgtgtgttttttgccaAAATGTTATTGTGAAATTAGACTTAAGTTTGTCTTTTgatcaaaaagttttaaatatgaATTACCCCACACTTGCAGATACCCTGAAAAATACATCTAAGAATTTCTGTCTCAAGATATATTTGTGAATCCAGCCCCAGATATCTTATTTAAatcatttgtatttaaaatgcatGTACTTCTTTCTGCTTTGCAGAAGGCTTCTTTAATTGATTCCGTAGATGAACCacaagttaaataaactctCACCTGTGTCAGTTTATTATTACACTCTGTGTGCCAGGCATTTGTAGGGCTTGTACTGATTATGATATGTGCCTCAGAGCAAACAGCCTTCCCACTCTGTTTTAATTTCAATAATTGTTTTACATGCACATACATACTGGTTTGACTGAGGATTTTGTCCACATTTGTCTGTATTAAATGATGTAACACACCCGCCTCTTAAAAGGTGCTGTTATGtaacaaccaaacaaacaaagagtaGGAGACTAATGGGAATTTGAAAggactgttgtttttttatgttgtatacATGTTGATTTATTCCTTGTTTTtatgtgtaaaacatttttcacatgCCAATAAAATCAGATCTTCCTTTGGAACACAGCCTTTTTACTTATGGTTTTTATGGTACTTATGTATATGTAATGTATTTGTTCTCCACTCTTGAAAATCtgtcaaatgttttatttttatcatttttatgtaatataaagTGATGTAAGATTAAATGAACAGATCAGGTGACAATATGAGCTGATGTACATTTTGAAACAGATCCACAGatatgtatattaaaatgttatttaaagctg

Function

symbol description
tbc1d19 Orthologous to human TBC1D19 (TBC1 domain family member 19).

NR:

description
TBC1 domain family member 19

GO:      GO:0005097,GO:0032313

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197539 False 705 lncRNA 0.33 1 31925694 31926398
XM_007248000.3 True 3699 mRNA 0.40 21 31892526 31926550

Neighbor

gene id symbol gene type direction distance location
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 32869 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 184571 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 222397 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 272994 31597346 ~ 31619532 (+)
man2b2 man2b2 coding upstream 307553 31572241 ~ 31584973 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 8173 31934723 ~ 32002483 (+)
dthd1 NA coding downstream 2085932 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 2101900 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2188591 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 2263084 34189634 ~ 34191960 (+)
G145974 NA non-coding upstream 43632 31788945 ~ 31848894 (+)
G145969 NA non-coding upstream 134859 31757097 ~ 31757667 (+)
G145966 NA non-coding upstream 152734 31736796 ~ 31739792 (+)
G145968 NA non-coding upstream 153419 31738782 ~ 31739107 (+)
G145875 NA non-coding upstream 242641 31648526 ~ 31649885 (+)
G146034 NA non-coding downstream 81176 32007726 ~ 32012637 (+)
G146047 NA non-coding downstream 143373 32069923 ~ 32070179 (+)
G146053 NA non-coding downstream 149430 32075980 ~ 32076196 (+)
G146062 NA non-coding downstream 324658 32251208 ~ 32251476 (+)
G146064 NA non-coding downstream 352627 32279177 ~ 32280251 (+)
smim20 NA other upstream 173475 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 538082 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 670192 31197218 ~ 31222334 (+)
LOC103044823 NA other upstream 762503 31063439 ~ 31130023 (+)
LOC103022860 LOC103022860 other upstream 977689 30911831 ~ 30914837 (+)
trnae-uuc_22 NA other downstream 144764 32071314 ~ 32071563 (+)
G146104 NA other downstream 685575 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 953140 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 2141031 34067581 ~ 34077975 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 3473228 35399778 ~ 35406330 (+)

Expression


Co-expression Network