G146003


Basic Information

Item Value
gene id G146003
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31737696 ~ 31739112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197565
gaagaggagctctatcccgcaccagcccgtactccattgccgtttcccccaggggctGTACTCTACCCGCGCTCGGTGACTTTcccggccgagacgccgcgctccgagacccccgcgacTCATCCGCGCTTCAAGAAGCACGCGACTGAGGCTCCACGccccgtgactcccgtggctcagccgctccccgagacttcagcggtggccgcgccgctccccgagacagcggcggcggcagcgccgctctctgaagctccagctaagctagctagcctgctagctccACCACGCTGTCCAGCCcgaccggcttccagctctccagcccggccggattCCAGTTCTGCGACTCCTGCTCCAGTAGCAggctccggccgcctctgactctgtgcccgcggctccggccgcctctgactctgtgcccgcggctccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgacccagttcccgcggccccggccgcctctgaccctgtgccagCTCCCAGAACATTGTTTGGGCCCAGGCCCCGGGTTTCCAGGCCTGCCCCGAGGCCCCCGGACTTTAATCCCAGTACcatgcccaggctggctccctGGACTTCCACacagactttagccagtcctgggcacttacctatgtttttggtccccctgtctctccctgtcctggtccccgtatctgtgtttgttcatgttcctgtccccttaggtttttctgttcctgtccccgtCACAGTGCTCGTGTCTGTCCCTGTCAATGTGTTTGTCCCTGTTCCCCCGTCCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197565 True 949 lncRNA 0.68 2 31737696 31739112

Neighbor

gene id symbol gene type direction distance location
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 20971 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 59150 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 82587 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 143309 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 164871 31566918 ~ 31572825 (-)
trnae-uuc_21 NA coding upstream 317685 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2094222 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2341142 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 2363647 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 2693719 34432831 ~ 34458413 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding downstream 32862 31703294 ~ 31704834 (-)
G145956 NA non-coding downstream 81435 31655855 ~ 31656261 (-)
G145937 NA non-coding downstream 110744 31624728 ~ 31626952 (-)
G145929 acox3 non-coding downstream 132246 31599496 ~ 31605450 (-)
LOC111194380 NA non-coding downstream 146720 31585072 ~ 31590976 (-)
G146005 NA non-coding upstream 17988 31757100 ~ 31757658 (-)
LOC111194382 NA non-coding upstream 107771 31846883 ~ 31849305 (-)
G146030 NA non-coding upstream 186409 31925521 ~ 31926550 (-)
G146031 NA non-coding upstream 194742 31933854 ~ 31934067 (-)
G146051 NA non-coding upstream 332629 32071741 ~ 32072104 (-)
LOC103035326 sall2 other downstream 179235 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 235035 31499916 ~ 31502661 (-)
G145899 NA other downstream 251626 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 510118 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1087390 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 131945 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1361185 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2045983 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2490808 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3665786 35404898 ~ 35435707 (-)

Expression


Co-expression Network