G146004


Basic Information

Item Value
gene id G146004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31736797 ~ 31739846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197566
GAGCCGTTCTAATATATGGTGAGTATACTCTTCTGCTCAATGAGAAATGTTTtatgtaaggtcctggccctgtttcctgtctgtcatcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgtttttccactcacctgtgttcttttgtaactccgccccttcgtcccaggtgtttcatgtttcctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttaacgtctgtcagtgttccatgttttccacGTTTTCCTCAGTCCTGTGTTCAGTAATCCCTGTGTATTGTATATCCTGTTTTCGTTAATAAATCCCGTttatgtttgcatttgcgtccgcctcctcgtcctccctgcaccccgcAACCTGACA
>TU197567
GAGCCGTTCTAATATATGGTGAGTATACTCTTCTGCTCAATGAGAAATGTTTtatgtaaggtcctggccctgtttcctgtctgtcatcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgtttttccactcacctgtgttcttttgtaactccgccccttcgtcccaggtgtttcatgtttcctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttaacgtctgtcagtgttccatgttttccacGTTTTCCTCAGTCCTGTGTTCAGTAATCCCTGTGTATTGTATATCCTGTTTTCGTTAATAAATCCCGTttatgtttgcatttgcgtccgcctcctcgtcctccctgcaccccgcAACCTGACA
>TU197569
GAGCCGTTCTAATATATGGTGAGTATACTCTTCTGCTCAATGAGAAATGTTTtatgtaaggtcctggccctgtttcctgtctgtcatcgtgcctgtgttgtcccacgtgacccgtgcccctgtgttctgcctgtgtttttccactcacctgtgttcttttgtaactccgccccttcgtcccaggtgtttcatgtttcctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttaacgtctgtcagtgttccatgttttccacGTTTTCCTCAGTCCTGTGTTCAGTAATCCCTGTGTATTGTATATCCTGTTTTCGTTAATAAATCCCGTttatgtttgcatttgcgtccgcctcctcgtcctccctgcaccccgcAACCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197566 True 414 lncRNA 0.48 2 31736797 31739846
TU197567 False 414 lncRNA 0.48 2 31736797 31739846
TU197569 False 414 lncRNA 0.48 2 31736797 31739846

Neighbor

gene id symbol gene type direction distance location
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 20072 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 58251 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 81688 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 142410 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 163972 31566918 ~ 31572825 (-)
trnae-uuc_21 NA coding upstream 316951 32056797 ~ 32056868 (-)
arap2 NA coding upstream 2093488 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2340408 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 2362913 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 2692985 34432831 ~ 34458413 (-)
G145998 LOC108428553,LOC106608959,LOC103364796 non-coding downstream 31963 31703294 ~ 31704834 (-)
G145956 NA non-coding downstream 80536 31655855 ~ 31656261 (-)
G145937 NA non-coding downstream 109845 31624728 ~ 31626952 (-)
G145929 acox3 non-coding downstream 131347 31599496 ~ 31605450 (-)
LOC111194380 NA non-coding downstream 145821 31585072 ~ 31590976 (-)
G146005 NA non-coding upstream 17254 31757100 ~ 31757658 (-)
LOC111194382 NA non-coding upstream 107037 31846883 ~ 31849305 (-)
G146030 NA non-coding upstream 185675 31925521 ~ 31926550 (-)
G146031 NA non-coding upstream 194008 31933854 ~ 31934067 (-)
G146051 NA non-coding upstream 331895 32071741 ~ 32072104 (-)
LOC103035326 sall2 other downstream 178336 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 234136 31499916 ~ 31502661 (-)
G145899 NA other downstream 250727 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 509219 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1086491 30644395 ~ 30650306 (-)
cckar cckar,LOC106608554 other upstream 131211 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1360451 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 2045249 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2490074 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3665052 35404898 ~ 35435707 (-)

Expression


Co-expression Network