cckar (cckar,LOC106608554)


Basic Information

Item Value
gene id cckar
gene name cckar,LOC106608554
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31871057 ~ 31885409 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197580
tacggTCACAAACCTTTTCCTGCTGTCCCTGGCAGTGAGTGACCTGATGCTGTGTGTCTTCTGCATGCCCTTCACACTCATCCCCAACCTGATGGAGAACTTTGTTTTCGGCAGTGGCATCTGTAAAACAGCCACGTACTTCATGgGTATCTCAGTGAGCGTATCCACTTTCAACCTGGTGGCCATCTCTCTGGAGCGTTACAGCGCTATCTGCAATCCGCTAACATCTCGTACCTGGCAGACCAAGTCCCACGCTGCCAAGGTCATCACCGCCACCTGGCTCTTCTCCTTCCTGCTCATGCTGCCCTACCCCATCTCCAGCACCCTGGTGCCGTACCGCCGCAACAACAACACCACAGGCAACATGTGCCGCCTGGACTGGCCCAGTGACGTCATACAGCAGTCGTGGTATGTGTTCCTGTTATTGATCCTGTTCTTGGTGCCGGGAATTGTTATGATGACTGCATATGGTCTCATCTCTGTCGAGCTCTACAGAGGAATCAAGTTTGAGATGGCTAACAGGAAGTCGAATCGAGAGCGAGAGAGCAGCACCGGAAGCCTTAAGCCTAGTGACAGCGACGGCTGCTACCTTCAGGCCTCCAGGAAGAAGCGTTCAGAACCCGCAGAACAGCACCAGGCCCTGACCGTCACTTCCAGCAACTCCAAGACCAAGCTGAGCCGCGTCTGCAGCAATAGCCCCACAGCAAACCTGATGGCCAAGAAACGGGTTATCCGCATGCTGCTGGTCATCGTGGTGCTCTTCTTCCTCTGCTGGATGCCGGTGTTTGCAGTTAACGCCTGGCGGGCCTT
>XM_022678335.1
ACAGCAGCGCGCGCGCTCACACAGACTGTAACTCACGCTCTCGCGCTCCGACTGGACTGTTTCCCGCCTAAACATCTCTAAATATCGCTAcagctgtaagagcaagtttaTTATTCTGGCTGCTTAACTTTGGACATTTACAGAGCTCCACCATGCCGTGGACAGACACGTAAAAACAGTGAAGTCCCGGCGCGCCTCCGCTGAGGAAACATACGTTTTTTTCCTGTAATATTGTGTAATAAAGTCGACCACGAGGCAACATGGAGACCTTCACCATCCACGACATGCTGCTGAACGGCACGGACATCTACCGGCTGCTGTGCGGAATGTTCGGGAACGGCTCGGACTGCGACCTCAGCCCCACGGCCACCACCGGCCCGACCCGAGAGCCTAAAGatacggTCACAAACCTTTTCCTGCTGTCCCTGGCAGTGAGTGACCTGATGCTGTGTGTCTTCTGCATGCCCTTCACACTCATCCCCAACCTGATGGAGAACTTTGTTTTCGGCAGTGGCATCTGTAAAACAGCCACGTACTTCATGgGTATCTCAGTGAGCGTATCCACTTTCAACCTGGTGGCCATCTCTCTGGAGCGTTACAGCGCTATCTGCAATCCGCTAACATCTCGTACCTGGCAGACCAAGTCCCACGCTGCCAAGGTCATCACCGCCACCTGGCTCTTCTCCTTCCTGCTCATGCTGCCCTACCCCATCTCCAGCACCCTGGTGCCGTACCGCCGCAACAACAACACCACAGGCAACATGTGCCGCCTGGACTGGCCCAGTGACGTCATACAGCAGTCGTGGTATGTGTTCCTGTTATTGATCCTGTTCTTGGTGCCGGGAATTGTTATGATGACTGCATATGGTCTCATCTCTGTCGAGCTCTACAGAGGAATCAAGTTTGAGATGGCTAACAGGAAGTCGAATCGAGAGCGAGAGAGCAGCACCGGAAGCCTTAAGCCTAGTGACAGCGACGGCTGCTACCTTCAGGCCTCCAGGAAGAAGCGTTCAGAACCCGCAGAACAGCACCAGGCCCTGACCGTCACTTCCAGCAACTCCAAGACCAAGCTGAGCCGCGTCTGCAGCAATAGCCCCACAGCAAACCTGATGGCCAAGAAACGGGTTATCCGCATGCTGCTGGTCATCGTGGTGCTCTTCTTCCTCTGCTGGATGCCGGTGTTTGCAGTTAACGCCTGGCGGGCCTTCGATAAGCGTATGGCTGACCGGCTGTTGACGGGGGCACCCATCTCTTTCATCCACCTGCTGTCCTACACCTCAGCCTGCGTCAACCCCATCATCTACTGCTTCATGAACAAGCGCTTTCGCCAGGGCATGCTGGCCACCTTCACCTGCTGCTCCTGCGAGCAGGAGGGCGAGGGCAGGGGCAGCGGCCGCCtcagtggaggaggaggaggggggctGGGCACTCTGGCGTGTGGAGGAGGTTTCGGGCACGACAGCGGAACTCTGACCAGACTGACGTACACCAGTGTCCGTGGGTCTGCTCAGGCGTAGGCCTGTTAGAAGTGAGAAGAGATGAAGAAGAATGTAGTGACCAGTACTTTTGGAATGGTCACCTTAAAAGAACCTCTTTTAGAGGAGTGTTGTGTATAACATTTTAGGCCACCTgagataaatatttaaacatatttagtaAGACATTATTTTTTGGGATCTTATACCATTATTATCCTTAGAATAAATAGACATAAACgttaataaagcacattgtgcTGTAGTGTGACAGGAAAgcctttggaaaaaaatatggaaaacgGAGGTATCTGGAGCAGAGTGTGTTATAGATCTTGATAGCTCTACTGAGGACATGCTGAGGGCCAAGTCTACCTTGACTTCAGGATGATTTGGAATGCAGTTAGGCCTGTGTGGAGAATTGAACACACTAAAAAGTGCAGGGCAGTGGCCCTCAGTACCAGGATTGAGAAATATTGGCTTAAAGGAGCTTTTGCACATGATTTAAAAATCTATGAAGTTCTAGGATTAACATTTTATAgaactgttattttttaaaggttccTGTCTAACAGtatttcacttttatttcagataaatagttttaaatagtTCCTCTTGGTTGGCCTGAGACTTTTGCACAGCGCTGTGTATAAATACAAAGACTGTAAGTAATTCTCTTTAGGCAGCTGTACAGTGTTTGAAGACCTTCAGTGAGTTTAGACCTTGGACACAGACTTCAATCTTCCTTTGATTGGGAGAGAAGTGACTGAAGAATGGCTGAATATGTGACATTGCTGTACTGATCGTGACTCTTGAGACAGGTGTAAACACACATGCACCGGTTGGCAGGAACATTGAAAAGCTGATGGCAGACAGAGTCCAGTGTTTAACTTTGAGGGCATGTCACGCCTGAATAAACACGTGGATCAAATGGAGCATGATTGTGGACGGCTTGAGAGGGTCTTCAGTCGGCATTAGGGTACTGAGTCATATGCAGAGCTTACGTAAGGGGCGGGAGTTTGTGCGTCTGTCTCTGGacctttctgtgtttttccagTTGTTTGGCCCATGTGCAGTCTATTGGCCAgaagttgtttttttactggACTGCTAAAATGTCCAAGCGTTGACAAACGCTTATAAAATAgaggctatatatatatgtatattttttatttacccataataaatataaagaatacaAAGTTTAAAATCCAAATTCACAGTAAAAGCAGAATAATATGttggtgaaaaataaaacagttgtACAATTTTTCTGTTTACCACAATTGTAGTCCGCCTGGCAAGACAGTGTTGAGTGGAATGAGTCCTTGGGGTTTTTAGAATGTGTAacttttcattcattcattcattcatgtctGTTTTGGTGTCTGAAGcttgcttctttagtttttttactgGAGCTATTGTAGCTTGAATTAAATTGTGAATTAAAGTGAAGTGGATTTTATACCAGATGCAAGTATATTATCATAATGTCAAaacttttaatcttttaattttgtgattattt

Function

symbol description
cckar Human ortholog(s) of this gene implicated in obesity. Orthologous to human CCKAR (cholecystokinin A receptor).

NR:

description
cholecystokinin receptor type A isoform X1

GO: NA

KEGG:

id description
K04194 CCKAR; cholecystokinin A receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU197580 False 810 TUCP 0.55 4 31872862 31880791
XM_022678335.1 True 3012 mRNA 0.47 5 31871057 31885409

Neighbor

gene id symbol gene type direction distance location
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 154332 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 192511 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 215948 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 276670 31592291 ~ 31594387 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 298232 31566918 ~ 31572825 (-)
trnae-uuc_21 NA coding upstream 171388 32056797 ~ 32056868 (-)
arap2 NA coding upstream 1947925 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 2194845 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 2217350 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 2547422 34432831 ~ 34458413 (-)
LOC111194382 NA non-coding downstream 21752 31846883 ~ 31849305 (-)
G146002 NA non-coding downstream 87816 31718604 ~ 31783241 (-)
G146005 NA non-coding downstream 113399 31757100 ~ 31757658 (-)
G146004 NA non-coding downstream 131211 31736797 ~ 31739846 (-)
G146003 NA non-coding downstream 131945 31737696 ~ 31739112 (-)
G146030 NA non-coding upstream 40112 31925521 ~ 31926550 (-)
G146031 NA non-coding upstream 48445 31933854 ~ 31934067 (-)
G146051 NA non-coding upstream 186332 32071741 ~ 32072104 (-)
G146060 NA non-coding upstream 342381 32227790 ~ 32228050 (-)
G146066 NA non-coding upstream 393526 32278935 ~ 32279973 (-)
LOC103035326 sall2 other downstream 312596 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 368396 31499916 ~ 31502661 (-)
G145899 NA other downstream 384987 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 643479 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 1220751 30644395 ~ 30650306 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1214888 33100297 ~ 33105587 (-)
LOC107197333 NA other upstream 1899686 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 2344511 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 3519489 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 3577788 35463197 ~ 35479194 (-)

Expression


Co-expression Network