G146053


Basic Information

Item Value
gene id G146053
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 32075980 ~ 32076196 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197650
taaaagacttcctctgttacttgtcctctgtcggtctttgcactgtcccccgttgtctgtctctctgcgtttctctgtctctctctgtgtttcatagccttagcccgagtcccttgttctttgtttatcttcttgtgtAATTCTTGTTTTGtacagttctgttttgtttgtctagctttagttattagtttacttCTGTGTTCCCTAGTCACCTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197650 True 217 lncRNA 0.41 1 32075980 32076196

Neighbor

gene id symbol gene type direction distance location
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 73497 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 216323 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 368025 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 405851 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 456448 31597346 ~ 31619532 (+)
dthd1 NA coding downstream 1936286 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 1952254 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 2038945 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 2113438 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 2300526 34376722 ~ 34383744 (+)
G146047 NA non-coding upstream 5801 32069923 ~ 32070179 (+)
G146034 NA non-coding upstream 63343 32007726 ~ 32012637 (+)
G145974 NA non-coding upstream 227086 31788945 ~ 31848894 (+)
G145969 NA non-coding upstream 318313 31757097 ~ 31757667 (+)
G145966 NA non-coding upstream 336188 31736796 ~ 31739792 (+)
G146062 NA non-coding downstream 175012 32251208 ~ 32251476 (+)
G146064 NA non-coding downstream 202981 32279177 ~ 32280251 (+)
G146065 NA non-coding downstream 210186 32286382 ~ 32286689 (+)
G146069 NA non-coding downstream 236090 32312286 ~ 32312542 (+)
G146076 NA non-coding downstream 295248 32371444 ~ 32371806 (+)
trnae-uuc_22 NA other upstream 4417 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 149430 31892526 ~ 31926550 (+)
smim20 NA other upstream 356929 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 721536 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 853646 31197218 ~ 31222334 (+)
G146104 NA other downstream 535929 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 803494 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 1991385 34067581 ~ 34077975 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 3323582 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 4415316 36491512 ~ 36494457 (+)

Expression


Co-expression Network