G43102


Basic Information

Item Value
gene id G43102
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 2908451 ~ 2933984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU48938
CTTCACAGCCTCGCTCCACTTGGCCCACGCGGTGCAGAGCATCTGCGATCAGGTCAGGAAGTCTGCCATTCAGGTCAACTGAAGCCAGGCAGCCCTGGTAGCCATCCCGCGATGCTATAAGCTTGGGCAGACTGTTGTACATGCTCTTCCCCACACCTCCAATGTACAGCTCTCCTTTGAGGTCCAGGTTGCGGGCTCCATTGGAGTGCTGCGTGACCGTGCGGGAGTCGATCTTGAGCGTGTGCACGTTGCTGTCATCGCGGGACACCATCACATTGTGCCACTGGTTGTCATTGAGCGGCTTGTCGGAGTTGCCCTTCATGAGCGACGGCCCATTGCCCAAGTCAAAAACATAATGGATGTACCCCTTCACAAGCTCAATCACGATAAAGTCACTGCCGTCTCCAGAGTTAAACAGCATCAGACCATCTGGGCTGGTGGTCTTGAACTGGAAGAAGAGGTGCATGGAGGCGTAAGCCTGCAGGGTGGACAGCGCCACATAACTGGCTCGATTCCGAAAGCTGACCGGATCGGCCACGATGCGGCGCATGCCGAAGCGAGCATTGAGCTCGCAGTAGGAGATGTCACCATTCTTGCACTGGTCTAGGTACGGCATGCCATTGAAAGAGAGGCCCTGCAGGTGGCCGATGAAGTTGGAAGGCATGACTGAGATAAAGCGCCGCTCAGTCATGATGCCCGTCTCTATGTGGTGGAACTCCAGCTGCGTGTGTGCTCCGCTCATCTGGCC

Function

NR:

description
PREDICTED: desmin-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48938 True 748 TUCP 0.56 3 2908451 2933984

Neighbor

gene id symbol gene type direction distance location
CI01000006_02766733_02767600 NA coding downstream 139713 2766365 ~ 2768738 (-)
CI01000006_02720061_02749853 NA coding downstream 158577 2719967 ~ 2749874 (-)
CI01000006_02689895_02705309 NA coding downstream 199884 2689655 ~ 2708567 (-)
CI01000006_02648355_02660501 PYGMB, PYGM, PYGMA coding downstream 247650 2646408 ~ 2660801 (-)
CI01000006_02634636_02643446 SLC22A6L coding downstream 265005 2634288 ~ 2643446 (-)
CI01000006_03018948_03029493 NA coding upstream 84415 3018399 ~ 3031161 (-)
CI01000006_03043665_03066360 NA coding upstream 109254 3043238 ~ 3067159 (-)
CI01000006_03188826_03200931 NA coding upstream 254793 3188777 ~ 3200931 (-)
CI01000006_03205005_03228985 PACS1, PACS1A coding upstream 271012 3204996 ~ 3229508 (-)
CI01000006_03244690_03253311 BBS1 coding upstream 310589 3244573 ~ 3253311 (-)
G43084 NA non-coding downstream 49053 2856968 ~ 2859398 (-)
G43005 NA non-coding downstream 198399 2709524 ~ 2710052 (-)
G42986 NA non-coding downstream 226951 2677722 ~ 2681500 (-)
G42987 NA non-coding downstream 236738 2670283 ~ 2671713 (-)
G43262 NA non-coding upstream 178527 3112511 ~ 3116186 (-)
G43264 NA non-coding upstream 183440 3117424 ~ 3118093 (-)
G43148 NA non-coding upstream 206966 3140950 ~ 3161767 (-)
G43274 NA non-coding upstream 228086 3162070 ~ 3162300 (-)
G43282 NA non-coding upstream 263892 3197876 ~ 3198222 (-)
CI01000006_02624725_02626124 COX8A other downstream 282265 2624436 ~ 2626776 (-)
G42934 NA other downstream 326245 2523776 ~ 2582206 (-)
CI01000006_02285649_02294759 NA other downstream 613453 2284994 ~ 2296494 (-)
G42667 NA other downstream 1017695 1888988 ~ 1890756 (-)
G42692 NA other downstream 1119817 1785501 ~ 1788634 (-)
G43549 NA other upstream 1418526 4352510 ~ 4355428 (-)
CI01000006_04560607_04560993 NA other upstream 1625525 4559509 ~ 4562068 (-)
CI01000006_06974359_06976736 NA other upstream 4039240 6973224 ~ 6976872 (-)
CI01000006_07500281_07507754 NA other upstream 4569161 7500246 ~ 7507976 (-)
CI01000006_10453630_10483241 NA other upstream 7548872 10453613 ~ 10484006 (-)

Expression


Co-expression Network