G146091


Basic Information

Item Value
gene id G146091
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 32504555 ~ 32513806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197695
accttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccacagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattattattattattccacctgttttttgtcCGGT
>TU197696
ctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaaccttagcaaccgcctagcaa
>TU197697
ctagcaacaccttagcaaccaccctggataccatagcaacaccttaggcaaccacctagcaacacttagcaaccgcctagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccacagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattattattattattccacctgttttttgtcCGGT
>TU197698
caccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccacagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattattattattattccacctgttttttgtcCGGT
>TU197700
tagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccgcctagcaacaaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccacagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattattattattattccacctgttttttgtcCGGT
>TU197701
acttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagccacaccttagcaaccacttagcaacaccttagcaacaccacagcagataccagccagcactgcaatcacactcgcagtttctgtaggaactgcaatctagttattattattattattccacctgttttttgtcCGGT

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197695 False 286 lncRNA 0.48 2 32509204 32513806
TU197696 False 257 lncRNA 0.53 2 32506504 32510239
TU197697 True 326 lncRNA 0.48 2 32507051 32513806
TU197698 False 242 lncRNA 0.48 2 32510110 32513806
TU197700 False 306 lncRNA 0.48 3 32504555 32513806
TU197701 False 252 lncRNA 0.47 2 32506802 32513806

Neighbor

gene id symbol gene type direction distance location
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 502072 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 644898 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 796600 31684228 ~ 31707955 (+)
LOC103032972 LOC103032972 coding upstream 834426 31666799 ~ 31670129 (+)
acox3 acox3 coding upstream 885023 31597346 ~ 31619532 (+)
dthd1 NA coding downstream 1498676 34012482 ~ 34025373 (+)
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding downstream 1514644 34028450 ~ 34061967 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 1601335 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 1675828 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 1862916 34376722 ~ 34383744 (+)
G146077 NA non-coding upstream 129514 32374546 ~ 32375041 (+)
G146076 NA non-coding upstream 132749 32371444 ~ 32371806 (+)
G146069 NA non-coding upstream 192013 32312286 ~ 32312542 (+)
G146065 NA non-coding upstream 217866 32286382 ~ 32286689 (+)
G146064 NA non-coding upstream 224304 32279177 ~ 32280251 (+)
G146107 NA non-coding downstream 133751 32647557 ~ 32648161 (+)
G146112 NA non-coding downstream 155705 32669511 ~ 32670970 (+)
G146129 NA non-coding downstream 228302 32742108 ~ 32742545 (+)
G146131 NA non-coding downstream 229154 32742960 ~ 32743293 (+)
G146137 NA non-coding downstream 256307 32770113 ~ 32770371 (+)
trnae-uuc_22 NA other upstream 432992 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 578005 31892526 ~ 31926550 (+)
smim20 NA other upstream 785504 31717142 ~ 31719051 (+)
G145748 mus81 other upstream 1150111 31352296 ~ 31354444 (+)
G145711 chd3 other upstream 1282221 31197218 ~ 31222334 (+)
G146104 NA other downstream 98319 32612125 ~ 32612562 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other downstream 365884 32879690 ~ 33104229 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other downstream 1553775 34067581 ~ 34077975 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 2885972 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 3977706 36491512 ~ 36494457 (+)

Expression


Co-expression Network