G146175 (pcdh7,LOC107568147,LOC107753999)


Basic Information

Item Value
gene id G146175
gene name pcdh7,LOC107568147,LOC107753999
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 33100297 ~ 33105587 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197806
ttatattttaatttctgcaGAAGACAAAAATGACAagcaatttatttacagaaatacctgtacaaaagcaaaaattaaattatgtaaaatagtTCATAAATAGAGGTGGACTTCAGCGTTCAGTACATTTTGCCATGTTCAGCTAAGCTGCGTGCATAGTGACTCCTAATAAAACGATGATTAAAACGGATTCGTCAATTCTACATCAATATCCAAGTCGCAGGACAAATAGAGTATGGTTAATATTACAAATCTCTCCACTAACCGTGAAACGGTGAAACGTACAAGCGTCCAAACGTCTGGGGGTCCAAAACAGGCAAAACACACACCTCAATCGACCTCAATGGAAGGGGATAGGTTTGGAACTTTCCACCATGTTgatttctgccttttttttagcttataaTGACAAAGCAATGCTATGTTCTCTATTGCtactatttctaCTtgtctcctttttttttcacactcaaTCAATCATTAGCTTCTTCTTCGCCACCACCACATCTTCTCACTTTGCGAAGACTtgcaaatttatatatatatatcattatctgtagagctgtgtgtgtgtgcaaatgcGTCTCCCGCAGAGGTGTGTGTTTTGCCTGCGAAGCTGcgttctttttttaatcattctcatataatatatttcttCTACATGATCTCCAGCTTTTCCTTCGTTAAGTAGTTAACGATCTGGTTAACGAAACCCGTTGCCAGTTGTCTGAAAGCGTCTGCGTTGTGTCTCTACTAGACAAACTTGGTTTAGCTCTTCATTCCGCACTGATCTTAACTATTGCAgcattgactgattgatttacTTATTGATAGTACCATAGTATGATTACTACAATGATCCTTGTTATCGACCCTTGTTATTAGTCtgcactgtatataaataccTGGTCTGATATCTAGGATAATCACCTAAAAAACGTGTGTACAGTCGTTACTCGTTGATAGACTTTTTGATAGATGACATTTGACCAATCGTACGTGAAGAAGTCACAAGATAAAagccttttttgtttgttttttttccttcttctcattttcttcttctgatTTAAAGTCTATCGCACTGTAGAAACCTCACCGGGGTGTGTAGTCTGAGCAGAAAGTACTCCTCTTCCACTTTAGAAAGCATCTTGGTTTTTATACTAGTCAAAACCGACAACGAGTCATACCAATAACGGTATAAAAAGGCACAGTTGCATATTTTGCATTCACTCTATAGATTTGTtttgattctgttttttttttttgttctttttgttcttttttttttttacagaagcaCTCTAAATATACAAAGTGGCACTGGAAAGGATAGGAAATAAGAACATAAGTAggaacaaacaacaacaaaaaaaaaacagtgaataatGCTCTAAAGCAGGGCATCATTACAAAGGTTACATTtcggaaaaataataaaaaaaaaaaaaaaaaaaaaaacagacagaactgTAAATCATTCCTTAAATCaactttaacataaaaaaaaacagatttttgttgAAAAGTTGAAGAAATGTGGGATGTTGACAAGCAGTCTTCCAGTGGTTTCACTGTGAGTCTgatttggagagagagagaaaaaaaaaaggaataaaaaaaggaaaaataatataaagggCACAAGTGTGAACACATTACATTtggtctgaaaaaaaagaagaaaaataaagataataaagataaaataaaggacatttaccaaaaaacaacttttaacaaCATTTAACAAAGTGCGATGCTAATGATAAAcgtacccaaaaaaaaaaaaacgatgaacAGTTGAATGGTTGAAGTATACACGTTTCATTTTTCATCCTCATCAAACTGATATACTAAGCCATACTACATGTCTAATGTTCGTTTTATAACAAAAGCAAGCAATGGACCTCCAAGTtcacagggttttttttttttgtctgttctttattttttgtcatttttttgtacattttttttaaacattttttcgcGTTTTTCCTTCGTAGTAAGTGAAGTAGAATCCCTTTAAACGTGCAATAAAAAGTACATATTTCTGTATACAGTTGATAAGCATCGGAGCACTTCTTTTAACGACGAGTAGTACACACAGACTACGGATTCAGGAGGCTGCGaggaaacgaaaaaaaaaatagggcaGTCCGTTCAAACCGAAgggttctctctttcttttttttcttttttttttttcttctaacgTACAAAAGAATAGTTCCATTGCATCTGGTTTTATTGTCACCCAGTTTTAAAGGCAAGACTTTGTGCCTCGTTAAGTATAAGTGTACTTCTCGACCTCGAACTAGGTTTGTTTGATACGTGGTTGATACGTGGGCACAGGACCtagaagtgtgtatgtgtgtatgtgcatatgtgtgtgtgtgtttgtgtgtgtgtttatgctaaGTATGCATGTGTTTTAGCAAGGACATCAATCCATCTCCCATCAATCCATCACGTTTGCCTCATttcttctttatctttatctcatCTTCGTGCCCATAGAGTTGTATGTGTATGGGCAGGTATTAAATGCAACATACACAACCAGATAAAAGCTATTttagagcacttttttttctatagcgtttcttttttgtaatattaccAAAACGTCACGTCACATTGTTCCCAgaactttgttttttgtgtagCCTCATTGCTTTTCACTCAACGTAAGACGTTCTCCCGGCCTTACCGACATATTCTGAACATCTTAAGACGACATCaacattttttcactttaatgaCCTTTTAATGATTGTACTCAATCTTATACTGTATGTTCtcgtatgtgtttgtgtgtttgcgtgttATAGcacttgtgtttgtgtttatatgtgtgtgtttttttagcaaTTGTGATGCTAGTGATGCTATATTGATTTGACGTGCTAgcgtgttgtgttgtgttttctgTAGCTTATCTATTTAAGCTAATAAAAATACGTGAACATGTGACCGTGAAGTAAAAGGAATGAATGCGcatttattattgtcatttattgcTCAATTTAACACTCATACTAAGAGAATGTTAGGCTGGGCCAGCCCAAGCGAGGGGGGGTGGGACCAATGGTTTCGCTGGTAGATATCCGATTATCTAAAGGGAGAGAGTAGTCCTAGTCCTGGTGGTCAGTTAGCTCTGATGCTAATGACGGATGCTAGCTGTTAGCTCGATGTTTGTGTGTGCGGGTATAGCATACTGTGTGCCATAGGTCACTAAGGGCTTCTGTGTCTGTCTAAGTCTGTCTGAGATGACAAAAGAACGAACAAAAAACTCaactttgaaataaaaaatcaacTTCAGCATAGTTTGCGCCCCACGACGAGAGGAGGCACCCATGTTCGCGGATGATGGATACGGATACGGATACGATACCAATGACCTCAGACATGTCGGGGACGTGTACACAAGAGAGGAGGCTGGGGAGGGGCACGATTGTGGTGGTGATTGATTgactaattgattgattgattgatagctTAGGTATAAAGCATGATGTCCGGAAACATGTGTTCAAATATTTATGTACAACTCATGAGCAACACGAGAGAAAAGCGTGTaggattttttgtgtgtgttttgtgtgtattgaAAAAAGCAGGTTAGGCACGCCACTCGCTTCGCCTCGGAGCGACGGGGAGTTCACCGTTAGTTTTACAGCTTGTGCGCTGACGATGAGTTGCGCCATCATTTACGGACATAGAAAGAGATATCTACAGACCCCGCCACAGTCATTGGAAAAGTTCTAGCTTACATAACAAACTGCTCCAGGTAATCTGGCCacaaatgttccaaatgttCCTGCTTCAGCAATCCATGCCATCACTGCGTTGATACCTCATGCATTGATTCTCGTCCATGattggcctatatatttttttttgtttattttttttgatgtgttttttgtcttttttttttaggggttttgttttttggtctcTCGGTGGATGCGATGAGTTTGTCCAGCAttagcagttcagttcagtcctTGGACAGATTGCATACGGATATGATGCATAAAAAAAGTCTACAATTCTGATCCCCTAgcggaaaataaaaaaacaaaaaacagaacgaaacaaattgaaaaaaaaagaaaaggatcaAAGAAGATAACAGCACCAGTCTTGCCTGCTCCCGTCCGTTCGGTATCAGTTAGAAAAAAGGAGGAACCAAACAAAAACGGCAGAAGAGAATAATAGTCTCGAGTCCTTTAAAGTTGGCTAGATTATGCATGCATGTTGTTTATGATGAAGTCTACAGAACCAGGCAGCACTTTGGAAAAAAAGTCAAGAGGGCCCGAAACGCTAGCAGCAAAGTAACACAGCACTCATCCACCAGCATCCCCCTCTCTCCACCTCCGTCTTCCTCTTTCTCccgctctttctttctttctctctctctctctcttgctttctttctctgtctctatttgtcttttattctttttctctttatatctttctacatcctcctcctcctccatgttctcctccttcaccctttttttttcaccaatgTTCTCAATCTCATCCTCCTCTTGCATCTTCTTGCATCGCATCGCGTTGCATTGAATCATGCAAGTGAGCGAGACCTTTCTTCACCATGCTTTttaaagtctttatttactTACAGAAGAAGAGTCCTGCCTATTTTTAAAGGAACGCAAGCTGTAAGAGCAGTGAGAGGAGCGTCCACGCCCTGCTTTTTTGTATGGCGCCACGGTTTGGTTTGCTAACAGTGTCTATGTTGAAAGTGGTCGGACCGAATTTTTTTACGTTACTCTGTCGCTGGGCATCGTTACAGGTAAACCTCCCGCCTGGTGAGGGTCCCGCACTGCACGGGCTTGTACTCGCCCGTCGGCGCCAGCGGGATTTCTTCGGTGGGGCGGGACGTCTCTTCGACGGCGGAGGAGAAGCCGGCTGAGCTGAAGGTGTCGTaggacgaggaggaggaggccatCTTCTTGTTGAGGAGGTTGCGGTTGCGGTCGCCTAGCAGGTGCGAGGGGTCTCCGTTGGCGACGGCCAGCGACTCCTGGCTGCCGGGCGGCTCAGCGACGCTGCCCCCTGGCGAGGTCATGAAGGTGGAGAGCTTGGGAGGGGTGGCCTTGGGCCTGCGTTCGGGCGAGGTGCGGACCGGCATCCAGCAGGCGTCGGAGTGGCCGTACTCATCGCACTCCCGCG

Function

symbol description
pcdh7 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Located in plasma membrane.

NR:

description
PREDICTED: protocadherin-7 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197806 True 5214 TUCP 0.40 3 33100297 33105587

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_21 NA coding downstream 1043429 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 1383572 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 1421751 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 1445188 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 1505910 31592291 ~ 31594387 (-)
arap2 NA coding upstream 727747 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 974667 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 997172 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 1327244 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 1359878 34465465 ~ 34556703 (-)
G146143 NA non-coding downstream 250607 32844566 ~ 32849690 (-)
G146133 NA non-coding downstream 349025 32750772 ~ 32751272 (-)
G146132 NA non-coding downstream 357004 32742959 ~ 32743293 (-)
G146128 NA non-coding downstream 369435 32730652 ~ 32730862 (-)
G146124 NA non-coding downstream 373261 32726825 ~ 32727036 (-)
G146198 NA non-coding upstream 227758 33333345 ~ 33333664 (-)
G146209 NA non-coding upstream 480333 33585920 ~ 33586391 (-)
G146219 NA non-coding upstream 555886 33661473 ~ 33661808 (-)
G146229 NA non-coding upstream 602068 33707655 ~ 33709779 (-)
G146232 NA non-coding upstream 627952 33733539 ~ 33733803 (-)
cckar cckar,LOC106608554 other downstream 1214888 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 1541836 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 1597636 31499916 ~ 31502661 (-)
G145899 NA other downstream 1614227 31483943 ~ 31486070 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 1872719 31223447 ~ 31227578 (-)
LOC107197333 NA other upstream 679508 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 1124333 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 2299311 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 2357610 35463197 ~ 35479194 (-)
G146686 NA other upstream 2778022 35883609 ~ 35884321 (-)

Expression


Co-expression Network