G146229


Basic Information

Item Value
gene id G146229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 33707655 ~ 33709779 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197864
ctcaatttcaattcaattcaatgtagctttattagcatgactgtgaattacagtgttgccaaagccttataacaattaacaacaatggtatgaacatacataacagacataataacatttataacagaaaGTAATTATGATtactataataattatatcatttatcaataattataattatattataataatcattttcTCTGGGATGGGGTCCCCAGGATTTTAGAGGTCATTTTGAGGTGTTACCCACTGTCTCTCAGGCTGTGACACGCACTGACGTATTTGGCAGCGAGGGGGGCGGTGTGCCCCTCCCCCAGAGTGATCCGTAATTTTTCTAATAGTGAAAATGTTTCAAaattttgaattaaataattaaatttgttAATGAAGAAATTTCGTGTTTCTTtgaatttttcacactgtagaaGGAAGTGCATCTCCGTCTCGACCTCACCTGTCGAACAGTGAGCACACAGTCTCTCCTCTCTGGGCAGCCAGGACTGTTTATACCTGCCGGTCTCTACGGCCAGGCTGTGGTCACTGAGTCTGTACTTGGTCAGGATCTGTCTCTGCTTTCTATCTCTGACAGTCAGGAGATATTCCTCTAATTTATACTCTGTTTTTAGGGCCCGATAGCATTCCAGTTTGTTTTGAGTTTGGATTTCTTTTTGCCAATGTTCCAGATAATCACTCTGACTGTGTTTGGTGATTTGCCTGATGTTGAGTTTGGGTGGTAAAGCAGTGCTGGGCTGAGGCTGCTGTCTATTAGTATCTGTTAGAGGGTTAATAAGCCTCAGGACCAGCTGACTGAGGGAGCTCTTTTCAGGGTTCAGTTCTTGGGTCTGTAACGCCCTAAATTGCAGCGTGTCACTGGGACTCGTCTTCAGGTGCATCCAGAAATTTAGAGCTCGTTTTTGGATGTTGATGATCAGAGGAAATCGGCCTAATTCTGCCCTGCATGCGTTGGTTGGAGTTTTTCTCTGGACTTTTAGGATCATTCTACAGAATTCTGCATGCAGGACTTCTGTTGGATGCTTGTCCCATCTAGTGTAGCTGTGCTGACTGAGTGGACCCCATACCTCACTCCCGTACAGCGCAATGGGCTGGATCACACTGTCGAATACTTTACACCAGATTGGAATGGGAATGTCAATATTGAAGAATTTTCTCCTGATGGCGTACATTGCTCTGTGAGCTTTATCTTTTAGTGCATTCACTGCCGAACTGAAGCTCCCGGATGCAGTAATGATGAGGCCGAGGTAAGTGTACTGCATCGTGTGCTCTAGGGCGGTGCTGCCCAGACTGAACTGGTATCTGTGTTCCTGACATCTGGGCTTCTTTTGGAAGATCATAACTTTGGTCTTTTTCAGGTTTACTGCCAGGGCCCAGTTCTGGCAGTACTGCTCCAGCAGGTCCAGGTGCTGCTGTAGCCCCTGTGCAGTGGGAGACAGCAGCACCAGGTCGTCTGCGTAGAGCAGGAACTTCACCTCCCCATCCTGCAGAGTGAGACCAGGAGCTGCAGACTGTTCCAGCTGCACCGCTAACTCATTAATGTAGATATTAAAGAGTGTTGGACTCAGACTGCAGCCCTGTCTCACTCCTCTTTTCTGAGTGAAAAATTCTGTATGTTTGTCTCCAATTCTTACTCTACATTTGTTTTCCAAATACATCGATTTAATGATGTCATAAACTTTACCCCCTACACCACTCTCCAGAAGTTTATAATATAGTCCTTTGTGCCAAATAGAATCGAATGCCTTCTTAAAATCTACAAAACAGGCaaagatttttccatttttggtttGATGTACGTGTTGGTTAATTAGGGTGTGTAGGGTGTAAATGTGGTCTGTAGTTCTGTGATTTGGAAGGAAGCCAATCTGATTCTTGCTCAGGACATCGTGTTCGGTAAGGAAAGACAGAATtctgttatttaaaatgttgttaaacACTTTCCCCAGATTACTGCTCACACAGATGCCTCTGAAATTGTTGGGATCTGATTTGTCTCCACTCTTATGGATTGGGGTAATGAGTCCTTGACTCCAGATGTCAGGAAAACAGCCTGAACTCAGGACGAGGTTGAATAATTTGAGCATTGCTCTCTGCAGATCAGGAGTGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197864 True 2125 lncRNA 0.43 1 33707655 33709779

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_21 NA coding downstream 1650787 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 1990930 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 2029109 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 2052546 31642324 ~ 31655109 (-)
LOC111194360 NA coding downstream 2113268 31592291 ~ 31594387 (-)
arap2 NA coding upstream 123555 33833334 ~ 34001620 (-)
paqr9 paqr9 coding upstream 370475 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 392980 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 723052 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 755686 34465465 ~ 34556703 (-)
G146219 NA non-coding downstream 45847 33661473 ~ 33661808 (-)
G146209 NA non-coding downstream 121264 33585920 ~ 33586391 (-)
G146198 NA non-coding downstream 373991 33333345 ~ 33333664 (-)
G146143 NA non-coding downstream 857965 32844566 ~ 32849690 (-)
G146133 NA non-coding downstream 956383 32750772 ~ 32751272 (-)
G146232 NA non-coding upstream 23760 33733539 ~ 33733803 (-)
G146253 NA non-coding upstream 112681 33822460 ~ 33822955 (-)
G146254 NA non-coding upstream 113236 33823015 ~ 33823521 (-)
G146303 NA non-coding upstream 307999 34017778 ~ 34092174 (-)
G146321 NA non-coding upstream 351715 34061494 ~ 34065495 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 602068 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 1822246 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2149194 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 2204994 31499916 ~ 31502661 (-)
G145899 NA other downstream 2221585 31483943 ~ 31486070 (-)
LOC107197333 NA other upstream 75316 33785095 ~ 33785421 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 520141 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1695119 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1753418 35463197 ~ 35479194 (-)
G146686 NA other upstream 2173830 35883609 ~ 35884321 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G148584 NA non-coding NC_048566.1 CM023220.2 45750230 ~ 45801517 (+)
bowfin (Amia calva) G135634 NA non-coding CM030138.1 CM030138.1 14675852 ~ 14677500 (+)