LOC103033902 (pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313)


Basic Information

Item Value
gene id LOC103033902
gene name pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34067581 ~ 34077975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197914
gtcggtctttgcactgtcccaTACAATTGTGTGACCAATAAGGTATTGTGAAGGAGTTTTCTTTGGAATAGTCATATCACGGAACAACCCTTTCTTGGCTACAATCTAGGCTTTGGATTATTTGCTATAGGTGGCAAATATGACAACATGGTGGAAAATTGATGGCTTATTGAAAGGAAGAGAATACAAGTCATTGCATTAAAAATTGTAGCATCAGTATCATTAGACATAATCTGTCGTTTATGCTACTGTTATGTCATTGTTATATATCAGAGTTTAGGTAGTTACAACAAACATGGAACATTTCCTCTCTGCATGTGGTCGTGACCAATGGGAATGAACTGTTGGTCCAGTTCGTGTCTGACTTGAGTGTGACGGCCTCAGGTTTCAGTGCGCGCTACACCAGCGTCCCTCGCGGCTCCCGAACCCCAACAACAGTTCTGGACACAGTGCCTGGAGCAAGAGTGGACCCTCTACCTGTTATCCCCAGCACTAGAGCACCTGCTAAGCCTACAACTAAGCCTAAAACCACACCCAAGCCTAGGTTTGTTGTTAAACCTAAAGCGACGCCAAAACCTCCATCTAGGCCACCAAAGCCTAAGCCCCCCAGACCAACTCCTCGCAAGCCAGCTGTTAGATCAACGAGTAAACCTAAACCAGCAAGACCCACACCCAAGCCTAAACCCAGGCCTACACCCAAACCTGCAGCTAGAGTTACACCAAAACCTCCAGTGAAAGTAACACAAAAGCCTAAGGTTAAACCGACCCCAAAACCTAAGGTTAAACCAACACCAAAGCCTAAAGTTAAACCAACGCTGAAGCCAGGGATTAAGCCTACAGCTAAACCAGTTAAACCAGCTAAACCAACACCTGCCCCCAAAGCCAAGCCTGGAGTGAAACCAACATCCAAACCCAAGCCCACTCCTGCAGCAGGAAGCAGGAAGACACCAGTAGGGGGAGCACAGTGTACCCAGCCTTGCAAGAGGACAGGAACTCTTCTGACCAGCTTCTGCCCCAGCAACTTTGTTCTAACTGGTAAGATCACGTCACTGACCCCAAGTTCCAGTGGCAGTGTCGAGGTGGACGTTTCTATTATTAAGGTTTACAAAAAAGGCCAACTTAACATCACCAAAAGAGGACCCATCATGTCGGTTACCCTCACAGCTCCCTGTGTGAAGTGTCCCGCTCTGCGTAAAGGAATAAACTACGTACTGATGGGTCAGGTGAATGAAGAGGGCCGTGGCCTTCTGAACCCGTCCAGCTTTGTCCTCCTCTATAAGACAGTGCACGACAAGGCACTGGCCAATCTCGCCAAGAAACCATGCTGACCTCACCTTCACTTCACCAAGCACCAGACTAACAGTCTTAATCAACCTACAGtatgaaaatattaatgttttaaaagcttAAGACTGAACTTTTTAACATTGCAGTGGATTATGCTGGTACTTTTATATGAAATGAAGTGAATCTTCACTACAGGATATACTGTATCTCTGTTGATACAGTTTACAGTAAAGTAGAAAGTCTATATGGGTTTTACTATCTTTAAAATGTCGCAACATAAGTGTTCTTATTCATTTTTAGACCTATCTGACACAGTTTAAGTCACTTTGCAAAATATGGTCCTATATATGAGACATaggaacatgtttttt
>TU197915
gtcggtctttgcactgtcccaTACAATTGTGTGACCAATAAGTGTGGTCGTGACCAATGGGAATGAACTGTTGGTCCAGTTCGTGTCTGACTTGAGTGTGACGGCCTCAGGTTTCAGTGCGCGCTACACCAGCGTCCCTCGCGGCTCCCGAACCCCAACAACAGTTCTGGACACAGTGCCTGGAGCAAGAGTGGACCCTCTACCTGTTATCCCCAGCACTAGAGCACCTGCTAAGCCTACAACTAAGCCTAAAACCACACCCAAGCCTAGGTTTGTTGTTAAACCTAAAGCGACGCCAAAACCTCCATCTAGGCCACCAAAGCCTAAGCCCCCCAGACCAACTCCTCGCAAGCCAGCTGTTAGATCAACGAGTAAACCTAAACCAGCAAGACCCACACCCAAGCCTAAACCCAGGCCTACACCCAAACCTGCAGCTAGAGTTACACCAAAACCTCCAGTGAAAGTAACACAAAAGCCTAAGGTTAAACCGACCCCAAAACCTAAGGTTAAACCAACACCAAAGCCTAAAGTTAAACCAACGCTGAAGCCAGGGATTAAGCCTACAGCTAAACCAGTTAAACCAGCTAAACCAACACCTGCCCCCAAAGCCAAGCCTGGAGTGAAACCAACATCCAAACCCAAGCCCACTCCTGCAGCAGGAAGCAGGAAGACACCAGTAGGGGGAGCACAGTGTACCCAGCCTTGCAAGAGGACAGGAACTCTTCTGACCAGCTTCTGCCCCAGCAACTTTGTTCTAACTGGTAAGATCACGTCACTGACCCCAAGTTCCAGTGGCAGTGTCGAGGTGGACGTTTCTATTATTAAGGTTTACAAAAAAGGCCAACTTAACATCACCAAAAGAGGACCCATCATGTCGGTTACCCTCACAGCTCCCTGTGTGAAGTGTCCCGCTCTGCGTAAAGGAATAAACTACGTACTGATGGGTCAGGTGAATGAAGAGGGCCGTGGCCTTCTGAACCCGTCCAGCTTTGTCCTCCTCTATAAGACAGTGCACGACAAGGCACTGGCCAATCTCGCCAAGAAACCATGCTGACCTCACCTTCACTTCACCAAGCACCAGACTAACAGTCTTAATCAACCTACAGtatgaaaatattaatgttttaaaagcttAAGACTGAACTTTTTAACATTGCAGTGGATTATGCTGGTACTTTTATATGAAATGAAGTGAATCTTCACTACAGGATATACTGTATCTCTGTTGATACAGTTTACAGTAAAGTAGAAAGTCTATATGGGTTTTACTATCTTTAAAATGTCGCAACATAAGTGTTCTTATTCATTTTTAGACCTATCTGACACAGTTTAAGTCACTTTGCAAAATATGGTCCTATATATGAGACATaggaacatgtttttt
>TU197916
gtcggtctttgcactgtcccaTACAATTGTGTGACCAATAAGTGTGGTCGTGACCAATGGGAATGAACTGTTGGTCCAGTTCGTGTCTGACTTGAGTGTGACGGCCTCAGGTTTCAGTGCGCGCTACACCAGCGTCCCTCGCGGCTCCCGAACCCCAACAACAGTTCTGGACACAGTGCCTGGAGCAAGAGTGGACCCTCTACCTGTTATCCCCAGCACTAGAGCACCTGCTAAGCCTACAACTAAGCCTAAAACCACACCCAAGCCTAGGTTTGTTGTTAAACCTAAAGCGACGCCAAAACCTCCATCTAGGCCACCAAAGCCTAAGCCCCCCAGACCAACTCCTCGCAAGCCAGCTGTTAGATCAACGAGTAAACCTAAACCAGCAAGACCCACACCCAAGCCTAAACCCAGGCCTACACCCAAACCTGCAGCTAGAGTTACACCAAAACCTCCAGTGAAAGTAACACAAAAGCCTAAGGTTAAACCGACCCCAAAACCTAAGGTTAAACCAACACCAAAGCCTAAAGTTAAACCAACGCTGAAGCCAGGGATTAAGCCTACAGCTAAACCAGTTAAACCAGCTAAACCAACACCTGCCCCCAAAGCCAAGCCTGGAGTGAAACCAACATCCAAACCCAAGCCCACTCCTGCAGCAGGAAGCAGGAAGACACCAGTAGGGGGAGCACAGTGTACCCAGCCTTGCAAGAGGACAGGAACTCTTCTGACCAGCTTCTGCCCCAGCAACTTTGTTCTAACTGGTAAGATCACGTCACTGACCCCAAGTTCCAGTGGCAGTGTCGAGGTGGACGTTTCTATTATTAAGGTTTACAAAAAAGGCCAACTTAACATCACCAAAAGAGGACCCATCATGTCGGTTACCCTCACAGCTCCCTGTGTGAAGTGTCCCGCTCTGCGTAAAGGAATAAACTACGTACTGATGGGTCAGGTGAATGAAGAGGGCCGTGGCCTTCTGAACCCGTCCAGCTTTGTCCTCCTCTATAAGACAGTGCACGACAAGGCACTGGCCAATCTCGCCAAGAAACCATGCTGACCTCACCTTCACTTCACCAAGCACCAGACTAACAGTCTTAATCAACCTACAGtatgaaaatattaatgttttaaaagcttAAGACTGAACTTTTTAACATTGCAGTGGATTATGAGTGAATCTTCACTACAGGATATACTGTATCTCTGTTGATACAGTTTACAGTAAAGTAGAAAGTCTATATGGGTTTTACTATCTTTAAAATGTCGCAACATAAGTGTTCTTATTCATTTTTAGACCTATCTGACACAGTTTAAGTCACTTTGCAAAATATGGTCCTATATATGAGACATaggaacatgtttttt
>XM_007242057.3
TCTCCCTCTATCCTGGTCTGTTCCTCTCTGAAAAGAAGGATgaggggtggtgtgtgtgtgtggtgtgtgggccTGCTGATTTTGGGGTTACGATGGGTGCACGGACAAAGCCAGACCAACTTCAcaaggcCTATTTTCCTGTGTGGGGGTCATATAGCAACAGAATCAGGGTTTATAGCTAGTGAAGATTTCCCCACGCACTACAAACCCAACTCCAAATGCACCTGGTACATCAGTGTCCCGGAGGGCCAGGTGGTCATGCTCCAGTTCCGGATCTTTGACCTGGAGGCGGACCCCACCTGTCGCTATGACTACTTGGATGTGTATAACGGTCACACGTACACTGTGCAAAAACTGGGCCGATTCTGCGGGACGTTCCGGCCGGGAGCGCTCATCTCCACCTCCAACACCATGATGCTGGAGATGGTGTCGGACTCCAGCAGAGGAGGACGAGGATTCCTGGCCTTTTTCAGTGGAGGAAAACCACATGTGGATGaGAATCAGTTCTGTGGAGGCAGGTTAACTAAGCCGGAAGGTTCAGTGAAGACTCCGAACTGGCCAGAATCTGATTACCCAGCAGGCATCAGCTGCTCTTGGCATATCACAGTTGCAACCAATATGGTGATTGAGGTGAAGTTTGAGAAGCTGGATGTTGAAGCAGATATATACTGCAGATACGACTACGTGGCACTGTTTAATGGAGGAGAGACGGACAATTCGAGGCGGATAGGCAAATTCTGTGGCGACTCGGTTCCAGATGTGGTCGTGACCAATGGGAATGAACTGTTGGTCCAGTTCGTGTCTGACTTGAGTGTGACGGCCTCAGGTTTCAGTGCGCGCTACACCAGCGTCCCTCGCGGCTCCCGAACCCCAACAACAGTTCTGGACACAGTGCCTGGAGCAAGAGTGGACCCTCTACCTGTTATCCCCAGCACTAGAGCACCTGCTAAGCCTACAACTAAGCCTAAAACCACACCCAAGCCTAGGTTTGTTGTTAAACCTAAAGCGACGCCAAAACCTCCATCTAGGCCACCAAAGCCTAAGCCCCCCAGACCAACTCCTCGCAAGCCAGCTGTTAGATCAACGAGTAAACCTAAACCAGCAAGACCCACACCCAAGCCTAAACCCAGGCCTACACCCAAACCTGCAGCTAGAGTTACACCAAAACCTCCAGTGAAAGTAACACAAAAGCCTAAGGTTAAACCGACCCCAAAACCTAAGGTTAAACCAACACCAAAGCCTAAAGTTAAACCAACGCTGAAGCCAGGGATTAAGCCTACAGCTAAACCAGTTAAACCAGCTAAACCAACACCTGCCCCCAAAGCCAAGCCTGGAGTGAAACCAACATCCAAACCCAAGCCCACTCCTGCAGCAGGAAGCAGGAAGACACCAGTAGGGGGAGCACAGTGTACCCAGCCTTGCAAGAGGACAGGAACTCTTCTGACCAGCTTCTGCCCCAGCAACTTTGTTCTAACTGGTAAGATCACGTCACTGACCCCAAGTTCCAGTGGCAGTGTCGAGGTGGACGTTTCTATTATTAAGGTTTACAAAAAAGGCCAACTTAACATCACCAAAAGAGGACCCATCATGTCGGTTACCCTCACAGCTCCCTGTGTGAAGTGTCCCGCTCTGCGTAAAGGAATAAACTACGTACTGATGGGTCAGGTGAATGAAGAGGGCCGTGGCCTTCTGAACCCGTCCAGCTTTGTCCTCCTCTATAAGACAGTGCACGACAAGGCACTGGCCAATCTCGCCAAGAAACCATGCTGACCTCACCTTCACTTCACCAAGCACCAGACTAACAGTCTTAATCAACCTACAGtatgaaaatattaatgttttaaaagcttAAGACTGAACTTTTTAACATTGCAGTGGATTATGCTGGTACTTTTATATGAAATGAAGTGAATCTTCACTACAGGATATACTGTATCTCTGTTGATACAGTTTACAGTAAAGTAGAAAGTCTATATGGGTTTTACTATCTTTAAAATGTCGCAACATAAGTGTTCTTATTCATTTTTAGACCTATCTGACACAGTTTAAGTCACTTTGCAAAATATGGTCCTATATATGAGACATaggaacatgttttttttctgctacaCAGATATTATGATATAAAGCATTGTATTTCTATTTTGTAAATTATGAAACTtgttattaaaagattttaccTAAA

Function

symbol description
pcolceb Predicted to enable collagen binding activity; heparin binding activity; and peptidase activator activity. Predicted to be located in extracellular space. Orthologous to human PCOLCE (procollagen C-endopeptidase enhancer).
pcolce2 Enables collagen binding activity; heparin binding activity; and peptidase activator activity. Predicted to be involved in positive regulation of peptidase activity. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in extracellular region.

NR:

description
PREDICTED: procollagen C-endopeptidase enhancer 2-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197914 False 1658 lncRNA 0.45 5 34074324 34077890
TU197915 False 1384 lncRNA 0.47 5 34074324 34077890
TU197916 False 1362 lncRNA 0.47 6 34074324 34077890
XM_007242057.3 True 2185 mRNA 0.47 9 34067581 34077975

Neighbor

gene id symbol gene type direction distance location
LOC103033595 per1b,per1,LOC108428562,LOC107711564,LOC107684947,LOC107557521,LOC107677837 coding upstream 5614 34028450 ~ 34061967 (+)
dthd1 NA coding upstream 42208 34012482 ~ 34025373 (+)
stim2 stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding upstream 2065098 31934723 ~ 32002483 (+)
rbpj rbpj,rbpjb,LOC107597867,LOC107707427,LOC107549731 coding upstream 2207924 31773504 ~ 31859657 (+)
LOC103032447 LOC108428553,LOC106608959,LOC103364796 coding upstream 2359626 31684228 ~ 31707955 (+)
LOC103032728 lrch4,LOC108428567,LOC107661958 coding downstream 37166 34115141 ~ 34170245 (+)
LOC103039994 NA coding downstream 111659 34189634 ~ 34191960 (+)
rwdd4 rwdd4 coding downstream 298747 34376722 ~ 34383744 (+)
LOC103032224 LOC107583291 coding downstream 307355 34385330 ~ 34423139 (+)
LOC103039377 pcxb,LOC108428573,LOC108267638,LOC108412801,LOC107661088,LOC107721657,LOC107583287 coding downstream 603323 34681298 ~ 35048688 (+)
G146265 NA non-coding upstream 2072 34029326 ~ 34065509 (+)
G146243 NA non-coding upstream 163292 33882808 ~ 33904289 (+)
G146241 arap2 non-coding upstream 209273 33851013 ~ 33858308 (+)
G146237 NA non-coding upstream 244380 33821431 ~ 33823201 (+)
G146231 NA non-coding upstream 333779 33733540 ~ 33733802 (+)
G146284 NA non-coding downstream 102283 34180258 ~ 34212243 (+)
G146296 NA non-coding downstream 131167 34209142 ~ 34211321 (+)
G146424 NA non-coding downstream 510992 34588967 ~ 34589166 (+)
G146441 NA non-coding downstream 675947 34753922 ~ 34754396 (+)
G146457 ppp1r14b,LOC108268202 non-coding downstream 1016386 35094361 ~ 35226268 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 963352 32879690 ~ 33104229 (+)
G146104 NA other upstream 1455019 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 1996018 32071314 ~ 32071563 (+)
tbc1d19 tbc1d19,LOC107660707 other upstream 2141031 31892526 ~ 31926550 (+)
smim20 NA other upstream 2348530 31717142 ~ 31719051 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other downstream 1321803 35399778 ~ 35406330 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 2413537 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 2612718 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 2960960 37038935 ~ 37042227 (+)
G147496 NA other downstream 4536903 38614878 ~ 38615355 (+)

Expression


Co-expression Network