G146321


Basic Information

Item Value
gene id G146321
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34061494 ~ 34065495 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU197979
tttattttcttttttttatacaaagaaattcaccaaaaaaaatacttacaaaCTGCTCAGGACCACTGAACCTCAATACGACATGACCGAAACAGAACAGAGCGACACGCAACAGAAGAGAAAGATGAgatgtgtgtaagagagagtttGCTGGTCCCAAGTGATCTTTTTCAGCGTCAAGCTGTTTTATACGTAAGCCTatcattttcttctctgattGCTTAGTTTGTATGACTAAAGCAAGCCACTAGAGTAAAACGGGGACCACACAGGCACTACAGCGTCTGCCCTCGAGGCCCTCTGAGATTGGAGGGTCCACTTTATAGGCCATCAACTGTGCTTCTCCTCTCACACAGAGGACGCCGAGTTCGGCTTCAAGGGCTTTGAGCTTTTACCTTCACTATTTCACTGTTGGTGTGGacatgaagaagaaaaaggtgGTGAAACAATCATCCAATCTGAACTGGCAATGAAAGTAATGCAAGTACAGCATTCATAAAGCTACAATACAGTTACttattataattagtataaTTCATGATGAATGACAAATACACcctatgtgtttttttcccccacaaaaaaacatttttccctctcattttcttttcttccccATTAGGATTAACTTTAATCCATGTTTTCTATAAAGCAGAAAACATAGAGCCCTAGAAAAGGCTGCTTTAGTCAATTTTAATTCTAAATTCAGGCTTCAAATGGTTATTTTGGTTCTTGGGAGCTAAATGCAGAATTGGATTTTTAggtaaaaataaactaatccTACTTTGCTGTTCAGTAAATCTTTCCTAAGCACCCTGAATACTGGTGCACAGTCTGCTGGTCACACAGCAATGCTGACAACAAATTAGCCAATAGCTAAAAAGGAAATTTAGAAACAATTTAGATTTAGACTTGTGACCATACTTTTTGCATTTATAAGCATACTGGTTTCCTGATGTGCTAAAATTATAACAAAAAGCTgtcaaacactaaaacacttttattctAAAGTGAATTTTTCAATTGCTAGCTCCTTgtttaaatttaacatttttcccCCAATATTTATCGGGGCACCCAAAGCACTACTGGGTGcttttttgcattaaaaaagcCCATATGTCGCAAAACGTTTTTTTGACATCAGGATGAGGTGCAAAAGCCAGAAtatcaataataagaaaaaaagctgCAAGTGCCTCTGTTCATCATCAAATCTGttcattataaagcatttaagTGCATGTGTACAGGGAATACATGTCATTTTTGGGCCAGATTTCATTCACAGTACAGACATAAACAGATATAAATCACTTATATTTCTTAATGTAAACGGTCATAATCTGGCAAATCTGATCGAAGATCTGATCTAAGATATAAAATTGGAAGTGATTATTGATGCTTATAATGTGCCAGTAGTCAAAGAACCACCAGAAGCACATTTATTGATAAGAGTGTTGTTAAATAagctaaaatgttaatttatgtcAGTTTTCTTGAAAGGATTATGTAGATGCTGTGTAGCTTTATAAATGCTGTATGAATATGCAGATGTTTTGCCATGTTATTATTTCCTCCTTTTTCAGAAACGTGCCTGAAAAGTTTTGaagctgcagttaaaaacatttttgctgcCAACAGATAATGAGCAATCCACTTGCGGATTATACAGATAGcacagaaaaatacaaataatccTTGGACCGAGTCGACACTAATTCTGTTCAAAAccatgtataaaaaatattcataaactttcaaaaacaaaataaacctgGGGATTTGTCTCCAGTAGATTTGGTCGAAACGCACCAGTAAACTGCAGATCTAACGTCCGCAAAGGCAGTGACCCACACTGACCCAGATGCCTGGGAACACACAGGACTGCATATGTTTGCCTCTGTTAAGTAGGTCCACCTCTGTTAAACACTCTGTTACTACTTCTAGTAATCATTCACCTGCTGACTGAATGTGTTTGAAAATTACTGTTACTGTTCAACCTTAGCTGGTGAGAGCGAGGCTATGTTACAGTATGCAGTCCTGTCCCAGAAAACATGCTCATGTGGGGCTCACATGGGTGGAATGTGGGCTAGCTGGGTTTCAGGTGGGTTCCAGATGAGCATACGGGCTTTGAGTGGGCTCGTACATGTGTTGATACTGGCCTCCATTCTAGTTGGGCTTCCCACCTTAGTCTTACATGGGTCCCACTATCTACAACCCAGATGGGGCCCATGTTTTACACAGTTCCTGCTCCCATCACTGACCCTGGTGGGCATCTGGGTGAATCTTCAAAGCTGGAACTCAAGAGAACGTTGTTTAAAAGGCCATAATGTCAATTTATGCTTCTGCATCAAATCTATACCTATATCTATAGCCTACATTAAcagtccacttcagtttctgaatcagtttctctgattttgctatttataggtatatgtttgagtgaaataacgagtaacattgctgtttaattcaataaactaaggacaacatttctcccaaattccatatcaaatatttgtcatttagagcatttatctgcatttATCTGGAGTggcagaaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgcacaaaatattgatttctgaacccttaaaacatgaatatgaacttgttttctttgcattattatttgagatctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctcgaaatgacaatttaatttttaatttgggagaaatggtatccgtagttcatagaataaaacaacaacattgaTTTTCCTCTAaattatacctataaatagcaaaatcagagaaactggtctcttaatttttttcaaagctgtataaaTGCTTACAACAGTGTAGGATACGCTCCCAGTCTAATTTACAAAATAGAATCTGCCTAGAtttgacgcagaagtataaagtTGATCACCCCTCTTTCCCTAGCAACCCAGACTGTCCAATAGGTCATAAATTCATTGGGGGAAACGTGACCCATGGCAGCGTTTGGAGCATTGATGTcacagttttagagttttacaaTAAAGTGGCCTTTTTTGATTTTCACATTCATCGTCTGTCAGCTTCTGCGGCTTTCAATCACTTCTGATCTGCATTCagctttacaaataaatatttgtactataatataaaacataagcATAAGCTTCACTTTAGTTTATGAGCATATGACACATATGACATAATGCCATCCTCCACCACATCACTGGTAACACTCAGAACATACGGTAGGGATTTAGTTCTGTTTCTTTCCCCCAACCTAAAGAGCTTTGGGATGATAACCCAAAAGGTCAGTCAGCAGGCTTGGCCTTGGAGGCTGTAGTCCTGTAGTTTAAAAGCACAGTATACAAATCAATCAGACCGCCAACCACGACTGTTCATCATTGTAAAAGTCTGTTGAATGTCAACATTTGATTTGAAGTGTGCTTTCCAAAAAAGTACCGTCTGTCCCCAGCAGCACCTGCTGATATCTTCAGTGAGTGAGAGTCTGGAGGCCTTTTCTGTTCCTCCACCACCAGTGGCTGCTCAGTAACATCAGCTCAGTGGCTCATTTCAGTCACACTGCCCACTTTCTCCTCCCTCATTTGTGAGGTAATGTCCTGATCCTCTGCTGTCATTTCTTGGTCGCTGATTTGTGTCGTCATTCCCACcgtctctctctcgttctcttcttcctctctccaCTGCCCCGCCTCCACCGCCTCTCCCTCCTCCATGGCTGTGTCGGGCTGGGTGTGTTTATCAGCCATGGTGCCCTCATCCGTCACCTCCAGCACACTGCACAGCTCCATCTCATGGATCTCCACATCGAAGGGGGCGGTGGGTGGAACTGAAGGAGGAGACTTGCAGCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU197979 True 3931 lncRNA 0.39 2 34061494 34065495

Neighbor

gene id symbol gene type direction distance location
arap2 NA coding downstream 59874 33833334 ~ 34001620 (-)
trnae-uuc_21 NA coding downstream 2004626 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2344769 31709203 ~ 31716725 (-)
sh3tc1 sh3tc1 coding downstream 2382948 31656834 ~ 31678546 (-)
htra3 htra3,LOC107757896,LOC107661977,LOC107549726,LOC107707797,LOC107660743 coding downstream 2406385 31642324 ~ 31655109 (-)
paqr9 paqr9 coding upstream 14759 34080254 ~ 34088604 (-)
LOC111194385 NA coding upstream 37264 34102759 ~ 34109347 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 367336 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 399970 34465465 ~ 34556703 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding upstream 833309 34898804 ~ 34943657 (-)
G146254 NA non-coding downstream 237973 33823015 ~ 33823521 (-)
G146253 NA non-coding downstream 238539 33822460 ~ 33822955 (-)
G146232 NA non-coding downstream 327691 33733539 ~ 33733803 (-)
G146229 NA non-coding downstream 351715 33707655 ~ 33709779 (-)
G146219 NA non-coding downstream 399686 33661473 ~ 33661808 (-)
G146324 pcolce2,LOC108428564 non-coding upstream 11454 34076949 ~ 34077953 (-)
G146331 NA non-coding upstream 86319 34151814 ~ 34153483 (-)
G146338 NA non-coding upstream 114844 34180339 ~ 34187108 (-)
G146390 NA non-coding upstream 152243 34217738 ~ 34222837 (-)
G146395 rwdd4 non-coding upstream 311226 34376721 ~ 34383713 (-)
LOC107197333 NA other downstream 276073 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 955907 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 2176085 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2503033 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 2558833 31499916 ~ 31502661 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 164425 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1339403 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1397702 35463197 ~ 35479194 (-)
G146686 NA other upstream 1818114 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 2233144 36298639 ~ 36338664 (-)

Expression


Co-expression Network