G146390


Basic Information

Item Value
gene id G146390
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34217738 ~ 34222837 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198095
TAAATTCAACTTATGTTCATAAGAATCTTAAGATTCTGCTCTGAGATTTGAAACCATCAAAATCCagttcttaaaaacaaaaagcacaaataTGAGTTTAAGTAGCAGGACAAATTAACTTAAGCCAAAGCAGGAGAAACTGTTGAAATCCCTGTGACTCCCTGTAGAGCACTGAATATCAAAGATAACTGTCCTGTGACACCCTGTAAAGTCTTGATTATCAGAGGTATCTGTTCTTGTGAAATCCCAGATGGGCTTCCCTGTGAGAACCCACCAAAAGAATTTCCCATTGTGCTGTCTCTAGAACTAGCACCCATTTTGCATCTATCTGCCTGCTTTTTACGACAAACTCGAGAAAAGTGACCAATTCTATGGCAGTAGTGGCACTCTTTTTTCTGATTAGAGAATTGTTGATTGGAACCCGAGTTTGATCCATTCTCTGTGAGGATGTGTATGGATGCAGGAACATGGTTTGGTTCAAGATCCACATCCAAACGGTCCAGTTCATTCTTAAGATCAACCCACTTAGTATTCCTCCAGTTTGGAACAGCAGTCACCAGAGCTTGTCTAAGATCTGTTTGTAGTGACTCAACCAGCTGTCTAAAATGGGGACCATCAGTTGTATTGTTGATGTTATCAGCATTGTATTGGCTGATACCTGAATGACGCAGAAAAACTCTTTCAAACCTCTCACAGAAGTCTGCTGCAGACTCTCCCTTTCTATGTCTGCAGTTGGTAATCTGCCCCCAATCAGTTGTTTTacgacatttacatttaatccaGTCATCAAAAGCTTCCCACCCTTTGTCAAGGTTCTGGCCTTTGTCACCCAAAGCATTCAACACCTTTTTAGCAAGTTCTCTACCATCTGTGAAGTTAAGAACTTGGCTAGCAATGGCTACAGCATCATTGGGATGTAGTGAGTACAAATTCCTTTTCTTATGCATGAGGTCAATGAAGTCGAGCCCCATTTCCCTTGGAGGTTTAAACTCTTTGGATATTGTGTCCAAAGTTGCTGCATCTAAAGGAATGTGCCAAATTTCTACTCTAGATTCACCACCTGCATTTCTCCTATTAAGTACCTCAG
>TU198098
TAAATTCAACTTATGTTCATAAGAATCTTAAGATTCTGCTCTGAGATTTGAAACCATCAAAATCCagttcttaaaaacaaaaagcacaaataTGAGTTTAAGTAGCAGGACAAATTAACTTAAGCCAAAGCAGGAGAAACTGTTGAAATCCCTGTGACTCCCTGTAGAGCACTGAATATCAAAGATAACTGTCCTGTGACACCCTGTAAAGTCTTGATTATCAGAGGTATCTGTTCTTGTGAAATCCCAGATGGGCTTCCCTGTGAGAACCCACCAAAAGAATTTCCCATTGTGCTGTCTCTAGAACTAGCACCCATTTTGCATCTATCTGCCTGCTTTTTACGACAAACTCGAGAAAAGTGACCAATTCTATGGCAGTAGTGGCACTCTTTTTTCTGATTAGAGAATTGTTGATTGGAACCCGAGTTTGATCCATTCTCTGTGAGGATGTGTATGGATGCAGGAACATGGTTTGGTTCAAGATCCACATCCAAACGGTCCAGTTCATTCTTAAGATCAACCCACTTAGTATTCCTCCAGTTTGGAACAGCAGTCACCAGAGCTTGTCTAAGATCTGTTTGTAGTGACTCAACCAGCTGTCTAAAATGGGGACCATCAGTTGTATTGTTGATGTTATCAGCATTGTATTGGCTGATACCTGAATGACGCAGAAAAACTCTTTCAAACCTCTCACAGAAGTCTGCTGCAGACTCTCCCTTTCTATGTCTGCAGTTGGTAATCTGCCCCCAATCAGTTGTTTTacgacatttacatttaatccaGTCATCAAAAGCTTCCCACCCTTTGTCAAGGTTCTGGCCTTTGTCACCCAAAGCATTCAACACCTTTTTAGCAAGTTCTCTACCATCTGTGAAGTTAAGAACTTGGCTAGCAATGGCTACAGCATCATTGGGATGTAGTGAGTACAAATTCCTTTTCTTATGCATGAGGTCAATGAAGTCGAGCCCCATTTCCCTTGGAGGTTTAAACTCTTTGGATATTGTGTCCAAAGTTGCTGCATCTAAAGGAATGTGCCAAATTTCTACTCTAGATTCACCACCTGCATTTCTCCTATTAAGTACCTCAG
>TU198099
TAAATTCAACTTATGTTCATAAGAATCTTAAGATTCTGCTCTGAGATTTGAAACCATCAAAATCCagttcttaaaaacaaaaagcacaaataTGAGTTTAAGTAGCAGGACAAATTAACTTAAGCCAAAGCAGGAGAAACTGTTGAAATCCCTGTGACTCCCTGTAGAGCACTGAATATCAAAGATAACTGTCCTGTGACACCCTGTAAAGTCTTGATTATCAGAGGTATCTGTTCTTGTGAAATCCCAGATGGGCTTCCCTGTGAGAACCCACCAAAAGAATTTCCCATTGTGCTGTCTCTAGAACTAGCACCCATTTTGCATCTATCTGCCTGCTTTTTACGACAAACTCGAGAAAAGTGACCAATTCTATGGCAGTAGTGGCACTCTTTTTTCTGATTAGAGAATTGTTGATTGGAACCCGAGTTTGATCCATTCTCTGTGAGGATGTGTATGGATGCAGGAACATGGTTTGGTTCAAGATCCACATCCAAACGGTCCAGTTCATTCTTAAGATCAACCCACTTAGTATTCCTCCAGTTTGGAACAGCAGTCACCAGAGCTTGTCTAAGATCTGTTTGTAGTGACTCAACCAGCTGTCTAAAATGGGGACCATCAGTTGTATTGTTGATGTTATCAGCATTGTATTGGCTGATACCTGAATGACGCAGAAAAACTCTTTCAAACCTCTCACAGAAGTCTGCTGCAGACTCTCCCTTTCTATGTCTGCAGTTGGTAATCTGCCCCCAATCAGTTGTTTTacgacatttacatttaatccaGTCATCAAAAGCTTCCCACCCTTTGTCAAGGTTCTGGCCTTTGTCACCCAAAGCATTCAACACCTTTTTAGCAAGTTCTCTACCATCTGTGAAGTTAAGAACTTGGCTAGCAATGGCTACAGCATCATTGGGATGTAGTGAGTACAAATTCCTTTTCTTATGCATGAGGTCAATGAAGTCGAGCCCCATTTCCCTTGGAGGTTTAAACTCTTTGGATATTGTGTCCAAAGTTGCTGCATCTAAAGGAATGTGCCAAATTTCTACTCTAGATTCACCACCTGCATTTCTCCTATTAAGTACCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198095 True 1087 lncRNA 0.41 2 34217738 34222837
TU198098 False 1087 lncRNA 0.41 2 34217738 34222837
TU198099 False 1087 lncRNA 0.41 2 34217738 34222837

Neighbor

gene id symbol gene type direction distance location
LOC111194385 NA coding downstream 108391 34102759 ~ 34109347 (-)
paqr9 paqr9 coding downstream 129134 34080254 ~ 34088604 (-)
arap2 NA coding downstream 216118 33833334 ~ 34001620 (-)
trnae-uuc_21 NA coding downstream 2160870 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2501013 31709203 ~ 31716725 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 209994 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 242628 34465465 ~ 34556703 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding upstream 675967 34898804 ~ 34943657 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding upstream 872413 35095250 ~ 35112113 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 1068331 35291168 ~ 35390551 (-)
G146338 NA non-coding downstream 30630 34180339 ~ 34187108 (-)
G146331 NA non-coding downstream 64255 34151814 ~ 34153483 (-)
G146303 NA non-coding downstream 125564 34017778 ~ 34092174 (-)
G146324 pcolce2,LOC108428564 non-coding downstream 139785 34076949 ~ 34077953 (-)
G146321 NA non-coding downstream 152243 34061494 ~ 34065495 (-)
G146395 rwdd4 non-coding upstream 153884 34376721 ~ 34383713 (-)
G146396 NA non-coding upstream 206161 34428998 ~ 34430757 (-)
G146431 NA non-coding upstream 414379 34637216 ~ 34637432 (-)
G146434 NA non-coding upstream 447600 34670437 ~ 34670847 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding upstream 818678 35041515 ~ 35055812 (-)
LOC107197333 NA other downstream 432317 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 1112151 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 2332329 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2659277 31550529 ~ 31558461 (-)
LOC103036756 LOC103036756,LOC108434598 other downstream 2715077 31499916 ~ 31502661 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other upstream 7083 34229920 ~ 34376670 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1182061 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1240360 35463197 ~ 35479194 (-)
G146686 NA other upstream 1660772 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 2075802 36298639 ~ 36338664 (-)

Expression


Co-expression Network