G146395 (rwdd4)


Basic Information

Item Value
gene id G146395
gene name rwdd4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34376721 ~ 34383713 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198106
AGAGAGGTACTAcaataaataactgaaaagaGAAAGCAACAGGCTAAAAACAGGTACAAATACAAACTGAAGGTCACCTGATCAAACTGCACTGCACCATAAAATGTCAATGTTATCATTTTTTAGCTGTCAGTGTTATGTGAACTGCAGCCTGGCTGGCTGATAACATGGTACATAAAGCCTCTCAGTTTGAAGACACTGGACCTGAGTCTTCCCTCAACATGGTCTTTCTCTCAGACACTCCATGAATTTCATGCTGACTAAACAgcatttcgctcattaaaagtCACTACCATTTTAGTGAAAGTACTATAAGAAGTCTGTCCTTGTGGCAAAGgacattttgacacatccaTATCTGTGTCTTCTTGTATTGGTGACACAAACAAAACGGTAGCTTCAAGTGTATTGAAATCATGGCTAGAGAACTCATTTAAACTTTCTTTAAAACCAGTCATGTCCGACTTTCCGTGtccattggtccattcatccgTATCGCCTTCCATTCATTTAGCCTTCTGCAGTTGTTTTTCTAGCCATCCTCCTTGCCTCCTGTTTTGCTCAGCTGCTTAATAACATCAACCCAATTCCAACCTCTGGGCAGTTCGCCTTTATTATCAGTTCTTCCTATCATTTTCCGTTTCTGTGCCTTTGTTAGTTGttccttcttctcctttttctttatGGCAGACACTGGACTATTTGTCTCAGTGGTAGAGGTCAGGGTCACAGCAGACACTACTGGCTGGTGATTCTCCATGAGCATCTCCTGGTTCTCTTTGGCCCATTCAAATAGTGTGTACATCATTGCAGTGCCCAGGTTTAACTCCACCTGCTCTTGCAGCTTAGAGAGTATTAGCTGCTTGATATCTGGAGAGATTCTGTTGTTAAAAAAGGCATCTAGGGATAAATGAGGTTCGGTTTCAGGATACGTCTCTGGCCATGAGACATCCAGTAGGAATGATTTGGACTCGTCATGGTCTCCAACCCTGAACTGAAAGGACACAGGGCTGAGCTCTTTGAAACACTCGTCTCCTTCATAAATTGACCTCAGAGCCTCCAACTCCATCTCCTGCTCCTCGTTAGCAGTCATGATTAACTCCTCAGCAGTCTGCCAGCTCCTCCTGCTGTTTCTCCCACTCAAATATCAAACCCAGCTAAATCAGCTCTCTCTGTGTTCTACTACTAAAACAGGATTTAAATGGGCAGCCTGAACAACTCATGCTGCCCAGCAAGATTTAACCAGCAGTTTCTTCAGTGAACTCCAAAAACCCGGCTGAGA

Function

symbol description
rwdd4 Orthologous to human RWDD4 (RWD domain containing 4).

NR:

description
PREDICTED: RWD domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198106 True 1282 lncRNA 0.43 7 34376721 34383713

Neighbor

gene id symbol gene type direction distance location
LOC111194385 NA coding downstream 267374 34102759 ~ 34109347 (-)
paqr9 paqr9 coding downstream 288117 34080254 ~ 34088604 (-)
arap2 NA coding downstream 375101 33833334 ~ 34001620 (-)
trnae-uuc_21 NA coding downstream 2319853 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2659996 31709203 ~ 31716725 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 49118 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 81752 34465465 ~ 34556703 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding upstream 515091 34898804 ~ 34943657 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding upstream 711537 35095250 ~ 35112113 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 907455 35291168 ~ 35390551 (-)
G146390 NA non-coding downstream 153884 34217738 ~ 34222837 (-)
G146338 NA non-coding downstream 189613 34180339 ~ 34187108 (-)
G146331 NA non-coding downstream 223238 34151814 ~ 34153483 (-)
G146303 NA non-coding downstream 284547 34017778 ~ 34092174 (-)
G146396 NA non-coding upstream 45285 34428998 ~ 34430757 (-)
G146431 NA non-coding upstream 253503 34637216 ~ 34637432 (-)
G146434 NA non-coding upstream 286724 34670437 ~ 34670847 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding upstream 657802 35041515 ~ 35055812 (-)
LOC103030001 NA non-coding upstream 730463 35114176 ~ 35119163 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 51 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 591300 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 1271134 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 2491312 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2818260 31550529 ~ 31558461 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 1021185 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1079484 35463197 ~ 35479194 (-)
G146686 NA other upstream 1499896 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 1914926 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 2282486 36666199 ~ 36706281 (-)

Expression


Co-expression Network