G146396


Basic Information

Item Value
gene id G146396
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34428998 ~ 34430757 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198108
tagctttaaaatatACCTTTAATTTAGGCAGACTGTAtcagaaataattttttttatatcacagttTCTGCTATTAGGGGTCGCAGCACATGATATGTGGACACTTTAAATAACAGAAACAATTTCAATTAACTAATGTTTTGTGAAAAGATAAgatgaatatttatatatgtcaCCAGTTAAggcttttatacatttttcttttagacTGAATATAATGCAGTCAAACGTGCATCACGTCACTGACCCAAATGCGGACCACTATCAAGGTGTACTTGAAGGCAGCTTTAGCTTCACAGAATGTGATCATCTTTGTGTTTCACTAGGGTGCTCCTGAGGTGCACAATCAGGGGGGAAGAGCCCTATTGTCAGTTAACCTTCATTATACTGTAAACTCAGACATGTACATATATCTCTGTGCTGTACTGTTAAaagtacactcttaaaaataaagctgccaaaaatatattattttaatacaaaacacactaaagaacttcttttattttgatgtttctttgaaaaaaaaaaaacattggtggTTCTTCTCTGTAGTCTGACATCAAAAAAACCCTTCTCGtgagctttatttttaagagtatgTTCCTGAATTATCTGTATATGAAGCTAATTCCTCTGATGTCTGATGAGCTGAAGCGGCTCGTGATCTGTTCATTTATTAGTTGTGGATGTCTAgacTTCCAGAGATTCCTGGATGTGTTCTGAATTTAAAATATCACTGGGGGAgttgaagtgtgcatctgactgttgacatttGCCATGAATGCCAGAAAAGGCCTAGAGTGACCCGGGCAAGTCCTGCCTCTTGCTTCTCCAGCTTTTTCAACTGCGAGAAGAAAATAACTGACCTATTTGAAGCCCACTCTGACACTCTTCAAAATGGAAGAGTGGGTTCAAGTCTGACGCCCTGAATGCCTTAAAACGTCTCTCTGGGAAAACACTAGCTCACAACAGTTCACAGCTGCCTTATACGTTACAGACAGGGGAATTGCACCTGCATTTCAAACCAGATTTTATCAATAGTAAAATAACGCATAATCGCTGTTATTTatactaataattaatatatgtttatttatgcaTATGATTTATTTGTGCCAATGACAGTAGTTATCCGAAAACACTCTGTAGCAAAACAACGGGTAACTAACTGAGGCCTAGCATGATTACTGACTACTCTGTCTGAAGGACGGACTGGAGTTTATCTGACACACTTAATGTTTCCAGGTACCAgcgcatcttaaaaaaatagaacatcattgaaaagttactttattttagtaattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198108 True 1308 lncRNA 0.36 2 34428998 34430757

Neighbor

gene id symbol gene type direction distance location
LOC111194385 NA coding downstream 319651 34102759 ~ 34109347 (-)
paqr9 paqr9 coding downstream 340394 34080254 ~ 34088604 (-)
arap2 NA coding downstream 427378 33833334 ~ 34001620 (-)
trnae-uuc_21 NA coding downstream 2372130 32056797 ~ 32056868 (-)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 2712273 31709203 ~ 31716725 (-)
LOC103030854 LOC103030854,LOC108428571 coding upstream 2074 34432831 ~ 34458413 (-)
nwd2 nwd2,LOC107661962 coding upstream 34708 34465465 ~ 34556703 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding upstream 468047 34898804 ~ 34943657 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding upstream 664493 35095250 ~ 35112113 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 860411 35291168 ~ 35390551 (-)
G146395 rwdd4 non-coding downstream 45285 34376721 ~ 34383713 (-)
G146390 NA non-coding downstream 206161 34217738 ~ 34222837 (-)
G146338 NA non-coding downstream 241890 34180339 ~ 34187108 (-)
G146331 NA non-coding downstream 275515 34151814 ~ 34153483 (-)
G146324 pcolce2,LOC108428564 non-coding downstream 351045 34076949 ~ 34077953 (-)
G146431 NA non-coding upstream 206459 34637216 ~ 34637432 (-)
G146434 NA non-coding upstream 239680 34670437 ~ 34670847 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding upstream 610758 35041515 ~ 35055812 (-)
LOC103030001 NA non-coding upstream 683419 35114176 ~ 35119163 (-)
G146561 LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270 non-coding upstream 822974 35253731 ~ 35261277 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 52328 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 643577 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 1323411 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 2543589 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 2870537 31550529 ~ 31558461 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 974141 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 1032440 35463197 ~ 35479194 (-)
G146686 NA other upstream 1452852 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 1867882 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 2235442 36666199 ~ 36706281 (-)

Expression


Co-expression Network