Gene
RNA
| Item | Value |
|---|---|
| gene id | G41605 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 3197836 ~ 3198286 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47229 | False | 451 | lncRNA | 0.36 | 1 | 3197836 | 3198286 |
| TU47227 | True | 219 | lncRNA | 0.48 | 1 | 3198068 | 3198286 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_03164803_03183473 | PCNX3 | coding | upstream | 14117 | 3164189 ~ 3183719 (+) |
| CI01000006_03102358_03152576 | NRXN2A | coding | upstream | 44967 | 3102358 ~ 3152869 (+) |
| CI01000006_03016090_03016706 | NA | coding | upstream | 180522 | 3015137 ~ 3017314 (+) |
| CI01000006_02774064_02933983 | NRXN2A | coding | upstream | 263853 | 2774064 ~ 2933983 (+) |
| CI01000006_02665949_02677083 | RASGRP2 | coding | upstream | 520621 | 2665949 ~ 2677215 (+) |
| CI01000006_03232003_03242938 | NA | coding | downstream | 33717 | 3232003 ~ 3243362 (+) |
| CI01000006_03294091_03298089 | SLC29A2 | coding | downstream | 95702 | 3293988 ~ 3298671 (+) |
| CI01000006_03319103_03319306 | NA | coding | downstream | 120817 | 3319103 ~ 3319520 (+) |
| CI01000006_03327370_03334117 | RIN1A | coding | downstream | 129084 | 3327370 ~ 3334702 (+) |
| CI01000006_03350988_03356496 | NA | coding | downstream | 152478 | 3350764 ~ 3357157 (+) |
| G41547 | NA | non-coding | upstream | 143916 | 2976694 ~ 3053920 (+) |
| G41538 | NA | non-coding | upstream | 165126 | 3022098 ~ 3032710 (+) |
| G41554 | NA | non-coding | upstream | 191521 | 2995770 ~ 3006315 (+) |
| G41570 | NA | non-coding | upstream | 453039 | 2737136 ~ 2744797 (+) |
| G41494 | NA | non-coding | upstream | 487821 | 2709526 ~ 2710015 (+) |
| G41606 | NA | non-coding | downstream | 276 | 3198562 ~ 3198765 (+) |
| G41614 | NA | non-coding | downstream | 50837 | 3249123 ~ 3250070 (+) |
| G41543 | NA | non-coding | downstream | 59763 | 3258049 ~ 3263442 (+) |
| G41555 | NA | non-coding | downstream | 70378 | 3268664 ~ 3336009 (+) |
| G41502 | NA | non-coding | downstream | 71678 | 3269964 ~ 3277004 (+) |
| G41591 | NA | other | upstream | 358415 | 2836167 ~ 2839421 (+) |
| G41424 | NA | other | upstream | 537266 | 2645662 ~ 2660570 (+) |
| G41170 | NA | other | upstream | 1502015 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 2704810 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 2714501 | 360009 ~ 484185 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 530944 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 1918920 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 2571803 | 5770089 ~ 5771775 (+) |
| CI01000006_06104927_06109730 | NA | other | downstream | 2910198 | 6104927 ~ 6109820 (+) |
| CI01000006_06122278_06122736 | NA | other | downstream | 2923749 | 6122035 ~ 6122751 (+) |
