G146561 (LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270)


Basic Information

Item Value
gene id G146561
gene name LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35253731 ~ 35261277 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198319
GCTCCTTAAAACTTTTTacgactggtaaaattcatacataagaagcaccagattataaggtgcactgtcaattttggggaaaattaaagggttttaagtgcaccttagagtgcgaaaaatacggtattcaGTTTTTGTATGTACACAGATGTGTATCAACAATAATAGTTGTCTACTGTAACTTTACCTTGGTGTTCGTCTGGGATGTAGTCCATAACTTCAGTGTACACCAGGAGAGAGGCTAGCAGGAGGGGCTGGTTAAGGTCATTCTTCAGATTAATATAATGGTATCCTGGGCGTAAAGCCACTACTGGTAAGATACGATGCCCAATAAACTTTCCGTTCTCCTCAAAGAGAGCGACCCTCAGCGAAGCCAGTGTAGGCAGCACCACTTTACTAAAGACGAAGGCCTCATCATCCCACACCGGGTCCATGGAGTTGTTGTTGGATGTTTTGGTGCGGAACTTTCTCTTGGTGTCGGCCGGCAGTCCAAACATATCCACTTCAACATATACACCCACCTTCTTATCAGTCAGAAACTGACCTGACACAATctTGATCTTGACCGTGTTGGCCACGATGCCATCCACTATGTTCTCAGTGAAGGGGTCAAAGTGTTTATCTGTCCGTCTCATGAATTCTGGCTTCAGCAGATAGCCACTGTGCCCGTTATACTCAAAAACACTTAGGTTCAGCTGCATAGGCAAATCTAGTGTCTGAAAGTTGAGCGCCACCATCTGGCAACCCACGTTCCAGAAGAGCTGAGGCATGTAGTTACTGGATTCCACCCGTGTGCCTTTAGGATAGATCCGACTCAACTGCTTCTTATTGTATTCCACAAATTCAATGGGGTTATTCTTCAGCGAATCCATGCCCTTGGTCTCCACAAACGAGGACATTTCAAAATACTTGTTcctctTGGCTGCCAGCTCAAAGGATTTGAATTTGACTGGTTCAATGTAGTTAACCAATGTGGACATCTCTTCTGTAGCGTTGACTTCACTGTAGGCTGTTCCCTCATCGGAGTGGTGTTTTTTGGGGTCTGCCACaggttcttcctcctcctcttcttcactCTCTCCATCACCCCGATCAATGGATTTGCGGATATCGCTGTCTTTGCTCATTCTCTCTGCCAGCTTCTCACCCCCATTGGAAATGATCTGGCTGGCTTCCCCCTCATTCAGCGGACAATcgttcagaggtgaggcTTGATCTTCCGCTCCATCTCCTGCTTTGCGCCTGACGCTACCTCCGTTAGTTGcctggtggtgatgatgatgatgcttcTTCTTGTTCTTGATAAGGATCTTTCCCATCAGTTCCTGTGGACTCGGCAACTGCTGACCTGGGACCAGCGGGTATTTCTCTAAT

Function

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198319 True 1374 lncRNA 0.46 11 35253731 35261277

Neighbor

gene id symbol gene type direction distance location
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding downstream 141618 35095250 ~ 35112113 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding downstream 310074 34898804 ~ 34943657 (-)
nwd2 nwd2,LOC107661962 coding downstream 697028 34465465 ~ 34556703 (-)
LOC103030854 LOC103030854,LOC108428571 coding downstream 795318 34432831 ~ 34458413 (-)
LOC111194385 NA coding downstream 1144384 34102759 ~ 34109347 (-)
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding upstream 29891 35291168 ~ 35390551 (-)
nagk nagk,LOC107697250 coding upstream 224642 35485919 ~ 35490358 (-)
m1ap m1ap coding upstream 259451 35520728 ~ 35558142 (-)
LOC103027072 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 coding upstream 459509 35720786 ~ 35727200 (-)
LOC103025974 ankrd46,LOC108428588 coding upstream 467435 35728712 ~ 35732299 (-)
LOC103030001 NA non-coding downstream 134568 35114176 ~ 35119163 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding downstream 197919 35041515 ~ 35055812 (-)
G146434 NA non-coding downstream 582884 34670437 ~ 34670847 (-)
G146431 NA non-coding downstream 616299 34637216 ~ 34637432 (-)
G146396 NA non-coding downstream 822974 34428998 ~ 34430757 (-)
G146559 NA non-coding upstream 8509 35269786 ~ 35288409 (-)
G146583 NA non-coding upstream 187912 35449189 ~ 35449493 (-)
G146585 NA non-coding upstream 197726 35459003 ~ 35460830 (-)
G146654 NA non-coding upstream 448165 35709442 ~ 35713313 (-)
G146665 NA non-coding upstream 471483 35732760 ~ 35734303 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 877061 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 1468310 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 2148144 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 3368322 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 3695270 31550529 ~ 31558461 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other upstream 143621 35404898 ~ 35435707 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 201920 35463197 ~ 35479194 (-)
G146686 NA other upstream 622332 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 1037362 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 1404922 36666199 ~ 36706281 (-)

Expression


Co-expression Network