hspa12b (cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934)


Basic Information

Item Value
gene id hspa12b
gene name cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35404898 ~ 35435707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198343
GTACATAAACATATGCTAtgcattaattttaaatatgtacCCAATGCAACTTATAAATGCACAATTAAATCTCTTTTCTATTCTTGTATTCAGCACattttaatcaatttaaaaatCCATAAATAAAGACGGCAGAAGGTGAAATGTGAAAGTTTTGACTTTAATGGTCCAATAAATAGTTCCACTGAATGACCAACATGGGAACATACTGCAGTCTGGCTTAAACGCCCAAACCAACATCAGTGCTTCTACAGTTTCACAAATCAGACAGCCATATTTTTCAGCGCACACACTAGTTGTCTCCAAATTGTACAAAACAAACTGCCTCTATCCAGCCACAGCTTTAAATTCCACTTACTTACAATATCCATAAGCACAAGCATTATAGATGAAGATAAGTTAAATGGAATCAAAACTGATGGCATCCTTTGACCTTCAAACAGAACAGTCCAGAAGCTACACATCTAAAGACCTGGACTGACCAGGGTTGGTGTGCATACTGGGAGAGGGGGGTTTAGTGGGCGTGTGCGGGTCTACCGCGTCCCCTTCCTCTACCAGCAGGTCCTGGTGGGCCATCACCGCCGGAGCGGGGGTTCTTGATGGTTTCGTCTACGGAGAGGATGAGACAAGCAGCCTCTGAGGCAGCGGTCAAGGCGTTGATGCGTACGATTGCGGGCTCCCACACACAGGCCTGGAAGTTATCAGCGATGTCCTCGTTGTTTACATCCACACCATACCACATTCCACCCTGTGCGTGTTTAGCCCGGAGTTTGTTAAGGATATTGGTAGCATCAAAGCCTGCATTATCGCACAGTTGCCTGGGGATGATTTCCAGGGCCTTTGCGTAAGCTCCGATGAGCAGCTGCTGCTTTCCTGGGATGGTCCTAGAATAATCCCTCAGGTACTTTGACAACTCCATCTCAATGGCGCCACCTCCAGCCACAATAGAGTCATTCTTGATGGCTCTGCGCACAATCATGATGGCATCATGCAGCGATCGCTCTGTCTCCTCCATAAACTGCTCAGCACCTCCCCTGAGGATTATGGTGCAGGTCTTTGCCTTCGGACAACCTTTGAAGAAGTTATACCTGGAGAAGAACACTAACCAGTCACTATACAAATTTACTCTCAATTTACAGTAACTACTGTCCATTAGGaatgtg
>TU198346
AGATGAGTGATATGAGAGCCATTAATCTTGAATAatatgttctgtgtgtgtcCTGTAGGCTGTGAAGGCCCTGTCACCTCCAGAATGGCAGAGATCCTGCAGCCCAGCACCAACAGCCTGCAGGTCCCAGGCAATGACAGATCTGTGTCCACATCTCCATCCAGTTCTCCTTCTCCATCAAGAAATGACTGCAGTATTGCTCCTCTCACACCATCACCATCTCCGagGACTGAGCTGAGGCCACGAGTCGCTTGTCCATTCTCTGTAGTTGTGGCTATTGATTTTGGAACCACCTCCAGTGGCTATGCCTTCAGTTTTACTGAGGACCCAGATGCCATCCATATGATGAGGCGCTGGGAGGGTGGGGATCCAGGCGTAGCCAATCAGAAGAGTCCCACCTGCCTGCTGCTGACCCCTGACCTGCGCTTTCACAGTTTTGGCTTTGCAGCCCGAGACAGCTACCATGACCTGGATCCAGAGGAAGCTAGACTCTGGCTCTACTTTGACAAGTTCAAGATGAAGATTCACAGCACCAGTGACCTCACCATGGTGACGGAGCTGGAGTCAGTGAGTGGACGAAGAGTTCGGGCCATAGAGGTCTTCGCACACGCCTTAAGATTCTTCAGAGAACATGCATTAAAGgagGTAAAGGACCAGTCCTCGTCAGTGCTAGAAGGGAATGACGTGAGATGGGTCATCACCGTTCCAGCTGTGTGGAGACAACCAGCCAAACAGTTCATGAGAGAAGCTGCGTACCTGG
>XM_007242038.3
agagagtgtggctCCCACTCTATCACCCTTTCCTCCCTGACATTCCAGTGCAGTTGAGGGATTGAGTGCTTGGATACAGGCGCAGGAGAGGAACACAGAGAAagggagacagggagagagagacagactgtgaaagagtgaaagagagagagagagagagagagagagagagagggagagggaaagaGTAAGAGGAATTCTCTCTGGGCTGGACTTTAGTTTGGAAACTTTAGTTTGGAACTTTTTGCTGCTCCTAAAGCATTCAGAGCTCACACTcattcctcttcttcttttgtcTGCTCTGCAGAAATCTCCGGCTTTGGGAGTTTGGGAATTTCGTCACTCTAAAGCCTCCAGTAGCCACAGAAGCATCATCTCTGGAAGTTTCTCCTCTTCTGTGGTCTCTGGACTTCTGCAGGACTTTAAACAGAGCTGGAAATTGCTGGTCAAGCAGGAGCAGAGCATTGTGTCATCAACACCAGGGCTGTGAAGGCCCTGTCACCTCCAGAATGGCAGAGATCCTGCAGCCCAGCACCAACAGCCTGCAGGTCCCAGGCAATGACAGATCTGTGTCCACATCTCCATCCAGTTCTCCTTCTCCATCAAGAAATGACTGCAGTATTGCTCCTCTCACACCATCACCATCTCCGagGACTGAGCTGAGGCCACGAGTCGCTTGTCCATTCTCTGTAGTTGTGGCTATTGATTTTGGAACCACCTCCAGTGGCTATGCCTTCAGTTTTACTGAGGACCCAGATGCCATCCATATGATGAGGCGCTGGGAGGGTGGGGATCCAGGCGTAGCCAATCAGAAGAGTCCCACCTGCCTGCTGCTGACCCCTGACCTGCGCTTTCACAGTTTTGGCTTTGCAGCCCGAGACAGCTACCATGACCTGGATCCAGAGGAAGCTAGACTCTGGCTCTACTTTGACAAGTTCAAGATGAAGATTCACAGCACCAGTGACCTCACCATGGTGACGGAGCTGGAGTCAGTGAGTGGACGAAGAGTTCGGGCCATAGAGGTCTTCGCACACGCCTTAAGATTCTTCAGAGAACATGCATTAAAGgagGTAAAGGACCAGTCCTCGTCAGTGCTAGAAGGGAATGACGTGAGATGGGTCATCACCGTTCCAGCTGTGTGGAGACAACCAGCCAAACAGTTCATGAGAGAAGCTGCGTACCTGgCAGGTCTGGTGTCTCCAGACTCTCCAGAGCAGCTGCTTATTGCTCTTGAACCTGAAGCCGCCTCAATTTACTGCAGGAAGCTCCGCCTTCACCAGGTCATTGACCTCAGCCAGCGACCAATAACCAATGGCCTGGACCTGGATGGGTCCCGCCCCTTCGACTCCAGCTTCAGGCAAGcaCGCGAGCAGCTTCGCAGGGCCAGACACAGCCGAACATTCCTAGTGGAGAGTGGAACTGGAGAACTGTGGTCTGAGATGCAGACAGgtgATAAGTACATCGTGGCAGACTGTGGAGGAGGGACAGTGGATCTGACTGTGCATCAGATTGAACAGCCTCAGGGGACACTAAAGGAGCTGTACAAAGCTTCAGgaGGTCCCTATGGAGCAGTAGGTGTAGACCTGGCATTTGAAGCCATGCTGTGTCAGATATTTGGGGCTGACTTCATTGAAACCTTTAAAGTAAAGCGTCCGGCTGCCTGGGTGGATCTGACCATCGCTTTCGAGGCCCGGAAGCGCACAGCATCTCCGGGCAGAGCCAGTGCACTCAACATCTCCCTGCCCTTCTCCTTCATCGACTTCTACAAGAGACACTGTGGACAGAGTGTGGAGACGGCACTGCGCAAGAGCAATATGAACATAGTAAAATGGTCTTCACAAGGGATGCTGAGGCTCACTACAGAGGCTATGAATGAGCTGTTCCAGCCGACCATCAGCAATATCATCAAACACATCGAGAACCTGATGCAAAAAGAGGAAGTGAAGGGTGTGCGCTTCCTGTTCTTAGTGGGCGGCTTCGCCGAGTCTCCCATGCTTCAGCGAGCCGTGCAGAACGCGCTGGGCCAACACTGCCGCATCATCATTCCGCAGGACGTGGGCCTAACTATCCTGAAGGGGGCGGTGCTCTTCGGATTAGACCCCACCGTAGTGCGCGTTCGCCGCTGCCCGCTGACCTACGGCGTGGGGGTCCTGAACCGCTTCGTGGAAGGACATCACCCTCGAGACAAACTGCTCATCAAGGATGGGCGTGAATGGTGCACCGACATTCTGGATCGCTTTGTTTCCGTCGACCAATCAGTGGCACTGGGCGAGGTGGTTAGGAGAAGCTACACCCCTGCGAGGGTGGGGCAAAGGAAGATCATCATTAACATCTACTGCAGCTCCACTGATGATGTGGTGTACATTACAGATCCTGGGGTTAGGAAGTGCGGCGCTATAACCTTGGACCTTCCTGAACCTGGTGCAGTGGCagctagcagcagcagcaacggTAACGGAGCCGCGTTTGAGCGCAGGGAGATAAGAGCCACCATGCAGTTCGGAGACACAGAGATTAAAGTTACAGCTGTAGATGTGCTGACGGGGAGACAGGTGCGGGCTTCTATTGACTTCCTGTCCAACTGACCTGACAACTGACTTATGGGACAGAAAACTCAAAAAGGGACAAGAACTGTTTAAAGGACTGATATGGCGCTCATCCAATCTCTGAACtgaaattttgttttattataagaagcactataaatatatttttctaagcAAATTACTTCAATACTGAGAAGGATGTATGCCCTACATGACCAAAACTGGTATGTAGGTAGAACTTTTTTTGACCTATGGATGTTGGAGGTGCCACCTAGTGGTTGAGGGtcaaactgcttgttttaaaatgcaaaaaaggaacagattttcagattttaaagGGGGGAAAGCTGGATTGTTCATTTTACATAAACTGGGATTACAggcacaaatatatttatatagtattagatttttgataacattttaattgtaatgATTTCAGTAGAAGTACATAAACATATGCTAtgcattaattttaaatatgtacCCAATGCAACTTATAAATGCACAATTAAATCTCTTTTCTATTCTTGTATTCAGCACATTTCTGGCAgcacattataaaacattattatattcTAAATGCCAACAGTAACAATGCTGCAAACCAACTTGCCTGCtcattttaatcaatttaaaaatCCATAAATAAAGACGGCAGAAGGTGAAA

Function

symbol description
cct7 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT7 (chaperonin containing TCP1 subunit 7).
hspa12b Acts upstream of or within sprouting angiogenesis. Is expressed in several structures, including brain; cardiovascular system; cranium; somite 1; and ventral mesoderm. Orthologous to human HSPA12B (heat shock protein family A (Hsp70) member 12B).

NR:

description
heat shock 70 kDa protein 12B-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198343 False 1163 lncRNA 0.45 4 35404898 35406548
TU198346 False 760 TUCP 0.52 6 35422965 35431920
XM_007242038.3 True 3216 mRNA 0.49 13 35406326 35435707

Neighbor

gene id symbol gene type direction distance location
LOC103029051 slc8a4b,LOC108428577,LOC108267603,LOC107721660,LOC107583282,LOC107661969 coding downstream 14347 35291168 ~ 35390551 (-)
LOC103029676 LOC108428539,LOC108268191,LOC107661966,LOC107744268,LOC107721670,LOC107661087,LOC105894187 coding downstream 292785 35095250 ~ 35112113 (-)
LOC103030319 LOC108428574,LOC108267639,LOC107583288,LOC107661089,LOC107721658,LOC101077706 coding downstream 461241 34898804 ~ 34943657 (-)
nwd2 nwd2,LOC107661962 coding downstream 848195 34465465 ~ 34556703 (-)
LOC103030854 LOC103030854,LOC108428571 coding downstream 946485 34432831 ~ 34458413 (-)
nagk nagk,LOC107697250 coding upstream 50212 35485919 ~ 35490358 (-)
m1ap m1ap coding upstream 85021 35520728 ~ 35558142 (-)
LOC103027072 t185a,tmem185a,t185l,LOC103027072,LOC108428587,LOC108429425 coding upstream 285079 35720786 ~ 35727200 (-)
LOC103025974 ankrd46,LOC108428588 coding upstream 293005 35728712 ~ 35732299 (-)
col4a6 col4a6 coding upstream 299465 35735172 ~ 35865931 (-)
G146559 NA non-coding downstream 116489 35269786 ~ 35288409 (-)
G146561 LOC108428576,LOC107721661,LOC107661090,LOC108267602,LOC107583283,LOC107744270 non-coding downstream 143621 35253731 ~ 35261277 (-)
LOC103030001 NA non-coding downstream 285735 35114176 ~ 35119163 (-)
LOC111194386 LOC108412801,LOC108428573,LOC107669309,LOC108278882 non-coding downstream 349086 35041515 ~ 35055812 (-)
G146434 NA non-coding downstream 734051 34670437 ~ 34670847 (-)
G146583 NA non-coding upstream 13482 35449189 ~ 35449493 (-)
G146585 NA non-coding upstream 23296 35459003 ~ 35460830 (-)
G146654 NA non-coding upstream 273735 35709442 ~ 35713313 (-)
G146665 NA non-coding upstream 297053 35732760 ~ 35734303 (-)
G146666 NA non-coding upstream 305624 35741331 ~ 35747114 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 1028228 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 1619477 33785095 ~ 33785421 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other downstream 2299311 33100297 ~ 33105587 (-)
cckar cckar,LOC106608554 other downstream 3519489 31871057 ~ 31885409 (-)
LOC103035326 sall2 other downstream 3846437 31550529 ~ 31558461 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other upstream 27490 35463197 ~ 35479194 (-)
G146686 NA other upstream 447902 35883609 ~ 35884321 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 862932 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 1230492 36666199 ~ 36706281 (-)
poln poln,haus3 other upstream 1649289 37084996 ~ 37246025 (-)

Expression


Co-expression Network