G146754


Basic Information

Item Value
gene id G146754
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36161600 ~ 36165981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198590
ggaacagtcatgtaaaaaagaatagaacaattagagccttaacaaactgaactctatcctactataacagttaaacatgaaaaataagactttaagacttttttggttcctgagaatgacaagtttttttctttaataaagatattattaactttatctgagagaaagatgctcattaaggtaccaaaactattaacatatttgaggctagacaaaacaactgttatttttatattttcaagtttttctttaagaagatgagaatgtccacattctctggagaaagggctgctctttgagctacagtgcGCTGCGCCAAAagtcgtgacacccctaattttTAGGGGTCTTGGCCTCATCCACATACAGTATAAACCCAGTTTTAAAACTCAAGACAAGTGGTGTTACCAGGTGCAAACATgatctagatcaggggtgtcaaacCTGTGTGCAAAGGGCTGTTATGGCTGCAGTTGTTAATCCAGCCAAGCAGAAGCACGTGTGTGATCAGCggttgataaaataaaatggtatCAGGTGTTCTGCTGGTTGTTTAGAATGGAAAC
>TU198591
ggaacagtcatgtaaaaaagaatagaacaattagagccttaacaaactgaactctatcctactataacagttaaacatgaaaaataagactttaagacttttttggttcctgagaatgacaagtttttttctttaataaagatattattaactttatctgagagaaagatgctcattaaggtaccaaaactattaacatatttgaggctagacaaaacaactgttatttttatattttcaagtttttctttaagaagatgagaatgtccacattctctggagaaagggctgctctttgagctacagtgcGCTGCGCCAAAagtcgtgacacccctaattttTAGGGGTCTTGGCCTCATCCACATACAGTATAAACCCAGTTTTAAAACTCAAGACAAGTGGTGTTACCAGGTGCAAACATgatctagatcaggggtgtcaaacCTGTGTGCAAAGGGCTGTTATGGCTGCAGTTGTTAATCCAGCCAAGCAGAAGCACGTGTGTGATCAGCggttgataaaataaaatggtatCAGGTGTTCTGCTGGTTGTTTAGAATGGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198590 False 566 lncRNA 0.37 2 36164940 36165981
TU198591 True 566 lncRNA 0.37 2 36161600 36165981

Neighbor

gene id symbol gene type direction distance location
LOC103023665 LOC108412584,LOC108267422,LOC107702308,LOC107596505 coding downstream 54741 36037008 ~ 36106859 (-)
LOC103024731 rasl11a,LOC108412587,LOC107596470,LOC107707904,LOC107684967 coding downstream 144076 36012780 ~ 36017524 (-)
LOC103025043 LOC108412585 coding downstream 172737 35971343 ~ 35988863 (-)
LOC103025363 LOC108412586 coding downstream 197189 35944355 ~ 35964411 (-)
col4a6 col4a6 coding downstream 295669 35735172 ~ 35865931 (-)
rps4x rps4x,LOC103480264,LOC107695327 coding upstream 114517 36280498 ~ 36285048 (-)
cited1 cited1,LOC107695332 coding upstream 122025 36288006 ~ 36292660 (-)
LOC103046336 LOC108442817 coding upstream 224124 36390105 ~ 36414090 (-)
LOC103046032 LOC108442818 coding upstream 264943 36430924 ~ 36445667 (-)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 295827 36461808 ~ 36498452 (-)
G146743 NA non-coding downstream 126098 36031139 ~ 36035502 (-)
G146703 NA non-coding downstream 234072 35926843 ~ 35927528 (-)
G146666 NA non-coding downstream 414486 35741331 ~ 35747114 (-)
G146665 NA non-coding downstream 427297 35732760 ~ 35734303 (-)
G146654 NA non-coding downstream 448287 35709442 ~ 35713313 (-)
G146875 NA non-coding upstream 150683 36316664 ~ 36318207 (-)
G146892 NA non-coding upstream 274774 36440755 ~ 36444051 (-)
G146922 NA non-coding upstream 497501 36663482 ~ 36664174 (-)
G146927 NA non-coding upstream 552576 36718557 ~ 36719947 (-)
LOC103040824 NA non-coding upstream 634020 36800001 ~ 36813698 (-)
G146686 NA other downstream 277279 35883609 ~ 35884321 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other downstream 682406 35463197 ~ 35479194 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other downstream 725893 35404898 ~ 35435707 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 1784930 34229920 ~ 34376670 (-)
LOC107197333 NA other downstream 2376179 33785095 ~ 33785421 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other upstream 132658 36298639 ~ 36338664 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other upstream 500218 36666199 ~ 36706281 (-)
poln poln,haus3 other upstream 919015 37084996 ~ 37246025 (-)
G147092 NA other upstream 1186097 37352078 ~ 37391735 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other upstream 1342680 37508661 ~ 37514452 (-)

Expression


Co-expression Network