G146805 (acadvl,LOC107731915,LOC107595296,LOC107675499)


Basic Information

Item Value
gene id G146805
gene name acadvl,LOC107731915,LOC107595296,LOC107675499
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36491512 ~ 36494457 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198654
aaaacacaaacaaaacattcGCTCATTCActcaaatgaacaaaaatgacaACTAACCGCTTTAGCGATGACTCCCTTCATGGTTCCTGAGAGCGCTGCAGCCATGCCAAAGCGTCCGTTGTTGAGAATATTCATGGCCACCTTAAATCCGCCTCCGACCTCCCCGAGGACATTTTCAGCTGGCACCCGCACATTCTCAAAATACAGTTCTGCAGTGTTTGAGGCCTTAATACCCATCTTCTTCTCAGGAGGGCCGCTGAAAAACGAGATGAGCACGAGAAAAGGAGGGAGACCAGGTTGAAGAGAGCAGGGAGATTAAGTGGAAAGAGAGGGTGAGACAAaggtacattaaaaataaaataaacagtgtagGGACCAAGAAAACACAGCCAAGAAACGAAAACTGGGACAACTGGGCTCTGAGGGAGGTCAGGAGTGGAGAGGAATGAAGGTATATGGTAAACAACCAGTTTAATACAGATATTATGTCCTAAACTTTTTACATAACAGATCATATTCAAATCTGAATACCTGCTACATAAAATGTACCTGTGAATTAATATGCCAGACAGATATCATTTCTTTGGTGATGTCAAAAATTATCACCCCCCCTCCCCGCATCTTGCACTTGTATTTCTTACCCTGAAACATGTGAATAGTCAGACCAAGCACTTAAGTCTACACTCACTGTGTGACTCCACCAAAGCTCCTCTCAACAATGAAAGCTGTGATCTTGTCCTTCACTTCTCCGGTTTTCTCATCTTTCACTGGAGTCTTAGCAAACACAGTGAAGATCTCAGCCAGGCCTGCGTTACTGATCCAAATTTTGCTTCCATTCATGGTGTAGTACTTTCCACAGGAGGATGGCACTGCTGTGGTTCTGATAGATGCTGCGTCTGAGCCACTAGCCGGCTCAGTCAGACAGAAAGCTGCTACTGTTTCACCTGAGGCGAGCTTGGGCAGgtatttctctttctgctgtTTGTTGCCAAAGAGGAGAATGCCCTTAAAGCCAATGGACTGGTGAGCACCGAGAGTGATCCCCACACCCAGGTCATGCATTCCCACAATCTCCACCAGCCTGGCATACTGTGTGTTGTTCAGACCAACGCCGCCCAGCTCAGTAGAAACCTGCAGACCAAAGGCCCCCAGCTCCTTCAGCCCCTCCAAGGTGTGGTCCTCCACCTTCTCCAGAGTATCATTCTTAGCAGGATCATTGACCTCTTCAAAGAATTTGGAAACCGGTCCCACCAGCTCCCTAAGAAAAGTAGACTGGTCCTCATTCAACACTGAGGGGAAGGGGAAGACTTGCGTGGTGCTGATCTGCCCCTTAAACATGTTTACTGCAAA

Function

symbol description
acadvl Predicted to enable fatty-acyl-CoA binding activity and very-long-chain-acyl-CoA dehydrogenase activity. Acts upstream of or within head development. Predicted to be active in mitochondrion. Is expressed in female organism; pectoral fin musculature; and pronephric duct. Human ortholog(s) of this gene implicated in very long chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADVL (acyl-CoA dehydrogenase very long chain).

NR:

description
very long-chain specific acyl-CoA dehydrogenase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198654 True 1349 TUCP 0.47 6 36491512 36494457

Neighbor

gene id symbol gene type direction distance location
LOC103037804 NA coding upstream 31934 36452586 ~ 36459578 (+)
LOC103046647 NA coding upstream 111915 36358463 ~ 36379597 (+)
LOC103046951 NA coding upstream 139091 36344210 ~ 36352421 (+)
cnpy4 cnpy4 coding upstream 148906 36339117 ~ 36342606 (+)
LOC103024410 LOC101154659,LOC107707922,LOC108412583,LOC105030858,LOC107684956 coding upstream 458248 36019444 ~ 36033264 (+)
LOC111194361 NA coding downstream 35141 36529598 ~ 36530442 (+)
LOC103044585 LOC103044585 coding downstream 55677 36550134 ~ 36552043 (+)
LOC103044291 NA coding downstream 60678 36555135 ~ 36560745 (+)
LOC103041331 trip6,LOC103041331 coding downstream 268684 36763141 ~ 36781624 (+)
mettl3 mettl3 coding downstream 299857 36794314 ~ 36800021 (+)
G146808 NA non-coding upstream 9457 36474171 ~ 36482055 (+)
G146799 NA non-coding upstream 47589 36442158 ~ 36443923 (+)
G146798 NA non-coding upstream 48003 36441696 ~ 36443509 (+)
G146783 NA non-coding upstream 105164 36386056 ~ 36386348 (+)
G146721 nhsl2 non-coding upstream 374601 36112153 ~ 36116911 (+)
G146816 dvl2 non-coding downstream 7941 36502398 ~ 36508994 (+)
G146819 LOC107833664 non-coding downstream 32856 36527313 ~ 36528037 (+)
G146822 NA non-coding downstream 51641 36546098 ~ 36596213 (+)
G146837 NA non-coding downstream 168847 36663304 ~ 36664837 (+)
G146839 NA non-coding downstream 226874 36721331 ~ 36724873 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other upstream 1085182 35399778 ~ 35406330 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 2413537 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 3387283 32879690 ~ 33104229 (+)
G146104 NA other upstream 3878950 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 4419949 32071314 ~ 32071563 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 196236 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 544478 37038935 ~ 37042227 (+)
G147496 NA other downstream 2120421 38614878 ~ 38615355 (+)
G147592 NA other downstream 2653142 39147599 ~ 39151200 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other downstream 4172783 40667240 ~ 40694778 (+)

Expression


Co-expression Network