G41543


Basic Information

Item Value
gene id G41543
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3258049 ~ 3263442 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47163
GTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCAATAACATCAAATTTAACACACCTGCTCCCCATTCACACCTAAGACCTTATAACACTAACGAGTCACATGACACCGGGGAGAGAAACTGGCTAATTGGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCACTTTTGTGGCCAGCGCTTTAGACATTAATGGGTGTGTGTTGAATTATTTTGAGGGGACAGCAAATTTACACTGTTATACAAGCTGTACACTCACTACTTTACATTGTAGCAAAGTGTCATTTCTTCAGTGTTGTCACATGAAAAGATATAATAAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCTGTGAGATACTGTATGTTGTATTTGTTACAAGATATAAATAGGCTACACATATTTTGCACTGCCATAATACATTGTGGCAGTGCAATGATACTCTATAGCCTATTATATATTTATACACACAACTAATATGCATGCAGCATTTCTGACAGACATATCTGTTGTAACTCACGATGTTTTCTGCACGTTCCTTCTCTATCTGAAAGTCTCAGAGCTCCACTGGTTTCCTTGGTGCAGGGGATGCAGATTGGCCTGTACAGACATACATAATAGCCATTCATTCATTACACTATTTTAACACTTTTAGTAGTGCAAAATGACGTATGAGCTGCATTCCTCACCGAAGATCGACACCCATAATTAGAGGTTCCACCAGTTGAATAAGAGCTACATCAAATTCATAATATTCAGGTATTCCCATGTGCTTTTTTGCTCTGAGGTTATAGCGAGGATGAGGTATGTACTGCTTCACTTTTATTCCTATAAGAGGAGAAAAGGAAACACTGCTGGTGAGATTTACACCATTATACATATTCGAAATGATATGGTTGAAGACACAACCTTACTTCGAATATTTGAACCAATATCAACAGTTATCCTTTCAGGTGTGTCACCAAATTTGAAGCAGTGAGCTGCTGTCAAGATAAAGGTTGAGGTGACTAATGACCCCATGCAGTTAGAGATTGTTCCATCGCTGCGCTGCAAAATCATCAGAGAATGGACTTTTTAATTCAACAAGGTAGAAAAACTTCGCATAGACTGTTCATAGAACTAGTGTGGTGATGCTAAGCCATTTTTTGTCCACTTTTTAAATAAGAAATAAGACTACGATATAGGGATACCCACAGTCACACTGATCTTTGCCAACCAGGGGTATTGACGACGTTCATGGGATGAATAACTATCATCGTAATCTCTGTAAAGTCCACATAATGCTACACTGGTGCCCTCAATCATGTTGTCAAATGTCTCCTGCAATTTTTCAATGCTCTGAAGCTTGAAGAAAAACTTCTCATTTCCCCGGTCAGTCTTCAAATCATTAATGTCCTCAGCATTCACATCATCTCCCATCCCAAACACATACAGTTCTGTACAACAACAAAAATATCAATAATTAAACAGAAGAACTGAGTTATTAAACATATGTGAGATGTATTTGAAGATTTGCTCTCCTTTTTGTTAATATTTTATAGTTTAATCTCAAAGATAATTCATGTTCTTCCTCACCAAGTTTGTCCTCACGTGAAGGATCATTTATCACAAGATTTTTGATGTTGTCCACATGTACTTTTGGATTACCACCCATGTTGGCCTGACCTAAAGACAAAATGAGTTGCAAAGTATAGTAAATTTAACAGGGTTTTTTTTTTTTTTTTGATTTGTAATAATTTTACATTTTACAATAATTTTTTACATTAAGAACAAAAGACACTTTAACAGTTTCAGTGGTGGAAATATAAATATTGTCATCAATACCATCAGAGAACATGATGACGATATGCTGGGTCTCCAAGAAGTCTTCTTTATTGGTTATCTGTTCTATTTGCATACTTTCTAAAATGTTCTTATAGGCTTGGGCGATATTAGTTCCTGATCGATCACCTTTACCTGTTAGTCACAAAAACATCAGGATATTATATGTCCTTAAATACTCTCAGACTGTCCAAAACTAAACTTTCAATTTTTGCTATAGTGAAACAAAATACTTGCTTTCATATTTATAATTAGCCAGTCTTTTAAGAATTTGTTCCAGGTTATTTCCTTGTCCACTCTTGAAGTCCCTCATGGAGACTATTCGGTAAACGTCTGTGGCAAAAATCAGGATCTCATAGTTTGGGGAGACCTCATAATAACTGATCTGTCAATGATTAACATAAGGTCAAATTTTCATTATGTTCACACAGTTCCGTTAGAAATATAACACATTACATTAAAGGTGCAATATGTAGAATTTTCTGTCTGCTAGAGGCCTATTCCAAACGAAGGCGTAGCTTGATGACGCCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACCTCACAGCCGGTGGAAAATAATCAGGATAGGACTCGGGAAGAAAACATGTTCATGGATGCGATTATTAACGTTACTGGAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGGCGCTGGAGCGATTGCTAATGAGAGACGAACGCAACACGCCGCAAGCAGCGGGACTTTTATTATGCCACAGTTGCCGGCGCTGCTTCCGCTTTTCCAGTCATGAGTATGAGGTAACAGAGCTCTGTTTATCATATTAGATACATTTGAGTGTGTTGAAAATGATGTTATAACGTTACTCTGTGCGTTCGCTCTGTGGCTGCTGTGAGACACTTGTTGCACACTGCAGTAAGATAGATCGATATTAGAATATCATATTAAATGCTGGATGGGCTGTGTTGATAAATCGCATGCAGAATTTTAAAACGTATTGTATGATGGAGAAAATTTTGTATTACTAATTTTGTATTACTTACTAAAAATAAAGCTGCATCTGATTATGCTATGTTAGTTACTTGACAAAATAGTGTTTTTCTCTGAGGCATGGTAAAGCATGGTACTCACAAATTTAAGATTTAAGTAATAAGACTAAACATGTTGAGCTATATAACAATAACTAGTTTTCTGTCTATAAATATATATATATATAAAAAAAAAACATGTAATATATTAAAGCGTCTTTGGTGTTTCCATGGTTTCTGCAAAATAAAACCGGAAACCGAGTGGGTATGACGCAATTTACAGGCGACTCCTCACACGTCCCGGAGCCTTGGTTAAAATTGCAATTTTCTCACGATTTACAAATAGTTGGAAACATTTGGGATATTGTAAGTACTCGAATGAACAAAATATATATCACTGGCCTAGTGGTTTTTGGATATTTTACTGCAAAATTCTTACATATTGCACCTTTAAGAGAAGTATAAAAAGTTGTGAGATTCTGAAGGGACACGAATGGTGCACTAGTATACTAATAAGACATAATTAGGCAGAAATATTGAAGAATGAAATTATTAATAATTACTGGTTATCAACGCACTATTTATTTCATATACCTTATCTATGAGTGTTTTGATGACATCTTTTGCCTTTTCAAAATCATCTTCTTCTATGCTGTCAGATACATCCAGGGCAATATAGATATCGAGTTTTCCACCCTTATCCACATGTATTTTTTTCCCATACTGATCTGAAGACACAGGGAACAGGTTTCATACAAAAAAGTTGTGGTGACAAAACAAGTAAATGTTGTCTTGCAGAGGAAGAAGGCAGTGTGAGTTGCACAAGACTACCTGTTCCTTCATCTTGTTGAGAAACTGCTAGATTTGACTTAAGAGAACTGCTGAAAGCTTCTGAGGCTTCCTCTGGGGTGTCGTATGTGAAATCAGCTGTATTTACACAACAACAACATTAGCAAAGCTGAAAATGTACTTTCAGTGAAATTAGTGCATTGAACAGGAAGGAGGAAAGTTTACCGTAACATTCTGGCTCTGTTCCTGACCACTGGCCATCATCCTGACAGACTCGCTCTTTGGAACCAATCAGAGTCAATGTTTTGTCACAGCGGTATATGACTTTGTCGTCAATATTAAAAATGTGGCCTGTTCTTGTAGAGCCAGCGGGAGTGCCGGGATCAGGACAGTGATCAGGTTTCTTCCACAGACTGGTGTGCTTCCACTCCACTTCCCATTCAATTGGCAAACACGAACCCCTGAGCCACGGAACGTGTAGCCTGAATGACATGAGTAGTGGGTTGTGTCGTTCACGAAATACCTAGGCAAATATGGATACACCTCTCCATTTTCAAAACCACGAGGATCAGGACATGTGATTTCTTGCACTCTGGGGGTTTTCTTTTGGGCATCGGGTTCCAGCCTCCCTTGTTACAGCGACGGATTTTAACAGTTGGGTAATAGCCTTCTGAACAGCTGTATCTTACAAGGCTCCCATCTTTTGAGAAAGAAAAACTGCCTCCACTAATACGGAGATTCTCTTCAGAACACAAATTAGAGGATGGAGCACCTATGGGGACTACCGGTTATGAGAGGACACAGCATTGCAAGCATGAACAGATTCAGCCATGGTTCATGCTCCATGATGTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47163 True 4563 lncRNA 0.37 5 3258049 3263442

Neighbor

gene id symbol gene type direction distance location
CI01000006_03232003_03242938 NA coding upstream 14687 3232003 ~ 3243362 (+)
CI01000006_03164803_03183473 PCNX3 coding upstream 74330 3164189 ~ 3183719 (+)
CI01000006_03102358_03152576 NRXN2A coding upstream 105180 3102358 ~ 3152869 (+)
CI01000006_03016090_03016706 NA coding upstream 240735 3015137 ~ 3017314 (+)
CI01000006_02774064_02933983 NRXN2A coding upstream 324066 2774064 ~ 2933983 (+)
CI01000006_03294091_03298089 SLC29A2 coding downstream 30546 3293988 ~ 3298671 (+)
CI01000006_03319103_03319306 NA coding downstream 55661 3319103 ~ 3319520 (+)
CI01000006_03327370_03334117 RIN1A coding downstream 63928 3327370 ~ 3334702 (+)
CI01000006_03350988_03356496 NA coding downstream 87322 3350764 ~ 3357157 (+)
CI01000006_03412397_03437333 MARK2A coding downstream 148955 3412397 ~ 3437710 (+)
G41614 NA non-coding upstream 7979 3249123 ~ 3250070 (+)
G41606 NA non-coding upstream 59284 3198562 ~ 3198765 (+)
G41605 NA non-coding upstream 59763 3197836 ~ 3198286 (+)
G41547 NA non-coding upstream 204129 2976694 ~ 3053920 (+)
G41555 NA non-coding downstream 5222 3268664 ~ 3336009 (+)
G41502 NA non-coding downstream 6522 3269964 ~ 3277004 (+)
G41513 NA non-coding downstream 20222 3283664 ~ 3288736 (+)
G41520 NA non-coding downstream 36643 3300085 ~ 3315791 (+)
G41506 NA non-coding downstream 75797 3339239 ~ 3344280 (+)
G41591 NA other upstream 418628 2836167 ~ 2839421 (+)
G41424 NA other upstream 597479 2645662 ~ 2660570 (+)
G41170 NA other upstream 1562228 1692065 ~ 1695821 (+)
G40768 NA other upstream 2765023 488407 ~ 493026 (+)
G40767 NA other upstream 2774714 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 465788 3734554 ~ 3736035 (+)
G41996 NA other downstream 1853764 5117206 ~ 5124149 (+)
G43896 NA other downstream 2506647 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2845042 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2858593 6122035 ~ 6122751 (+)

Expression


Co-expression Network