LOC103043480 (LOC108442826,LOC108267520,LOC107738028,LOC107683536)


Basic Information

Item Value
gene id LOC103043480
gene name LOC108442826,LOC108267520,LOC107738028,LOC107683536
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36666199 ~ 36706281 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU198822
GGCTCTGTGtgtcctctctcctctcctgaAATGCTGAGGCAATGCTGTTCTGTACAGCACTCATCCAGGCCTGCTGCTGTCGCTCTGAATCTGCCTGCAATAGACAGCTCCTGCtcgcacacacaaaacacacacgcacacacacacacacacacacacacacacaaacacacacaattacacacacagacccagCTGCTTTGACCTCCTACTTCTGCCCTCTCAGTAAGACATCTCTAGCCTTTAGCCTGCGCCCAAGCTAAGCTGCATTTCAACCAAGACGCTCAAGTATCAAGTTCCAGGCTTTATAGAGTGAACGAGAGCAGTAGGCGACTTAAGCTTCAGATATTCTTAATACGAGCTGTGCGTTTTTTTCCTGAGCCCTTGTTCCGGTAGCCTTCAATTCTCTGATTTAATGCATGTTAATATAGGAGAGTGTTCAAAAGAGGCTGCAGGCTTTCTCATACgtttgtatttgtatgtatgcAAGgcctttttgtatttatttcaacatgagtgttaattttttttatttttatattgatttgatcatttttaacaccttttttaaaGCGTTTGTACGTGCGTTGTCGGACTGCATGCGCTTTGTGAGCGAGAAGCTGTTGAATGTACGGcaaattcagtgatttaaaaaaaaaactaaacagtgTTATTTGTGTTATTCATGTTTATAATATTCAGGACCAAATATCGTCAGGTTTCATaatacatgtgttttttttctccagactTTTTGTACTGATTTGTTTAGAATGTCCTTGTAGAAGAATGCATAAAAAAAGCTAttcctatttttgttttttgcgtCAGTGTGTACCTAATGGAGTGTTATACTTTATGGAAAAACCAACCCTAAGCATCACCTTGAATTTGCTGCTTCAAGATTtcatgcaatatatatttttcaaatagcttttgcatttatattttttatctgtgGGGAATCATCACTGCATTATGAATGTATTTGCACTTCTTTAGGGCTTTAAACTGGAAATTAAAAAGGAAAGCTATTACTTTC
>XM_007241997.3
tgtgaggtaAACGAAAAATGAAGACGCGGAGAGAAGGAGGGACCGAGGAGAAAGGGGCATTTTCGCCTGTCTGAAGCTGCTTGTGCTCTTCTGCTTCGGCTGCTGCTGTGAGTGAAAAAAGAGGGCGGCTGAACTCTGGAGGACTGGCGAGACAGCCCTGCTCGGTCAGTCGTGACGCGCGTtcacaaggagagagagagggggatttaagaagaaggagagagagagacgtacTGCCTCATCGTTATGGTTTTATAAGGCGGGCGTGAGGAACATACCGGAGTGACTAGGACTGAGCGCAGCGCCAGGGAAGAACGCACAGCCAGCTAACGGCTTCTCCACGTCCCCGACaggctgggtgtgtgtgtgcatgcaggtgtgtgtgtgtgtgagctgtagTTAAGTCAGTGCGTATGAGTGTGTGCCACCGAGACATcattaacagcagcagcagcggcggcagcagcagcatgtcGAACCGAAAGCACCGGGACAGCCAGGAGATCTGTGCCCGGAAGGTGCGGGAGCTGGCGCAGATTGGAGCCAACAAGCAGTGCTTCGAGTGCGGCCAGCCCGGGGTGACTTACATCGACATCACGGTGGGCTGCTTCGTCTGCACGTCATGCTCCGGAATGCTGAGGGGGCTGAACCCGCCCCACAGAGTCAAGTCCATATCCATGACAACCTTTTCCCAACAGGAAGTGGAGTTTTTGCAAAACCATGGCaacgagGTTGGAAAGAGGACCTGGCTCTGTACGTTTGACCGGAAGACCGACGGCTGTTTTGACACACGTGATTCGCAGAAGTTTAAGGAATTTCTTCAGGACAAGTATGAGAGGAAGAAATGGCATTTTTCTAAGAGTAAGGTAAGGAGGGATGTGGAGGGTCCATGGAGTCCAGGAGTTCAGCCTGTACCTGCTCCCCATGGCCCCGCTCAGAACCAGCCTCCCCTCGGACACCCCCTGAACCCTACAGCACGTCCCACACGCACTCTGTCGCAGTCTCAGATATCATCATGGGATAGAGCTCCAGTTGTATCCCCGGCTGACGTCCGTACGGAGGTGTATACAGCTCGGCCCACTCGATCCCAGAGCTTTAGAGACCCCCATATTAAagatTCTTTGTTAAGTGGGATGGAAAGGCAGAGGCCAGGAACGATTTCTCCAGCAATGGGCCCCCAGAGTCGCCTTCCCTCTTTCCCTGCCCTTCCACGTCCTTCAGCAAGTAGCACTTTCAAAAACAGCTTCACGCTAGGTCGCACAGTGTCCTCAGGAGGTGGAGCTCCATTCAGGGCCTTCCCTAAATCTCTGAGTTTGGATTTCGGGGGGCTTGCTCCAGCCCACAGTGCCCTAAACCCCCCAGCCCCACCCACTGTCTCTCAGGATAGGTACGCTGCCGTGTCTCACCTTGACAAGGTTTTTGCCGACACCACACCTGCCACAGtcgtCTCCACAGCTCCCTCTGGTGGCCCTCCACAGTACAGCACCCTTTTTGGCAACAGGCTCTCTTCTAGCTCCACACCTGCAAGCTCTCCAGGGGTTCCAGAAGTCACTTCTGCTCCTCAGACATTTGCAAATTTCCCAAATCCATTCACTTCTACAGTCAGCAGCTCGCAGCCTGCTCTCTCCCCCAGCAACCCCTTCAACAGCACAGCTGCAGGTGATTGCAGTACTCTCGTCTCACCATCACCTTCAGCTGTCTTCCCCCACTCAGCCACCTTTCCTGCTCCCACCAGCCAGAATGCTTTTTCACATGAGCCTGCCAATAACCAGGAAGCTAATGGTTTCACACCCTTCCCTGCCTCTGAGTCCACCTCCAAAGTTCAGCGACCCATGTCCGTCAACCCATTTACTGGGAATGTTTACCCCACCAGAGGAGCGTCACTGAACCCTTTCATCTGATCCCAGCACCACTCGGccagcgagaaagagagagagacagatcgagagagagagagagtgagagagaatgtgtgtgtatatatatctatatataagagagagagagaaagagacagaaagctCTTTAGAGCTAGTGCCATTTTCATGCCTCCAGAGAATTCCTCCGTCAGATAAGGGGGTAAATACACATGCCTGCCCACTTTATTGAGTGTTGGTtaatgtgtgtaatagagtgtattacttttgttcatatatgtgtgtttgtgtgtgagtgtgagagtataTGTGTCTATCATTTTGCACCACATGCTACAAGTCAAAGCTTTATGTATgcatttgtctgtgtgtgtgtgtgtgtgtgtgtgtgagaatgttttTGCCATTGGATGTATTTCATAGTATAAATTGTTTCATGGTGTAATAGCAAAAAGGCCATTCCAgatgcgtgcacacacacacaaacacacacaattacacacacagacccagCTGCTTTGACCTCCTACTTCTGCCCTCTCAGTAAGACATCTCTAGCCTTTAGCCTGCGCCCAAGCTAAGCTGCATTTCAACCAAGACGCTCAAGTATCAAGTTCCAGGCTTTATAGAGTGAACGAGAGCAGTAGGCGACTTAAGCTTCAGATATTCTTAATACGAGCTGTGCGTTTTTTTCCTGAGCCCTTGTTCCGGTAGCCTTCAATTCTCTGATTTAATGCATGTTAATATAGGAGAGTGTTCAAAAGAGGCTGCAGGCTTTCTCATACgtttgtatttgtatgtatgcAAGgcctttttgtatttatttcaacatgagtgttaattttttttatttttatattgatttgatcatttttaacaccttttttaaaGCGTTTGTACGTGCGTTGTCGGACTGCATGCGCTTTGTGAGCGAGAAGCTGTTGAATGTACGGcaaattcagtgatttaaaaaaaaaactaaacagtgTTATTTGTGTTATTCATGTTTATAATATTCAGGACCAAATATCGTCAGGTTTCATaatacatgtgttttttttctccagactTTTTGTACTGATTTGTTTAGAATGTCCTTGTAGAAGAATGCATAAAAAAAGCTAttcctatttttgttttttgcgtCAGTGTGTACCTAATGGAGTGTTATACTTTATGGAAAAACCAACCCTAAGCATCACCTTGAATTTGCTGCTTCAAGATTtcatgcaatatatatttttcaaatagcttttgcatttatattttttatctgtgGGGAATCATCACTGCATTATGAATGTATTTGCACTTCTTTAGGGCTTTAAACTGGAAATTAAAAAGGAAAGCTATTACTTTCA
>XM_007241998.3
tgtgaggtaAACGAAAAATGAAGACGCGGAGAGAAGGAGGGACCGAGGAGAAAGGGGCATTTTCGCCTGTCTGAAGCTGCTTGTGCTCTTCTGCTTCGGCTGCTGCTGTGAGTGAAAAAAGAGGGCGGCTGAACTCTGGAGGACTGGCGAGACAGCCCTGCTCGGTCAGTCGTGACGCGCGTtcacaaggagagagagagggggatttaagaagaaggagagagagagacgtacTGCCTCATCGTTATGGTTTTATAAGGCGGGCGTGAGGAACATACCGGAGTGACTAGGACTGAGCGCAGCGCCAGGGAAGAACGCACAGCCAGCTAACGGCTTCTCCACGTCCCCGACaggctgggtgtgtgtgtgcatgcaggtgtgtgtgtgtgtgagctgtagTTAAGTCAGTGCGTATGAGTGTGTGCCACCGAGACATcattaacagcagcagcagcggcggcagcagcagcatgtcGAACCGAAAGCACCGGGACAGCCAGGAGATCTGTGCCCGGAAGGTGCGGGAGCTGGCGCAGATTGGAGCCAACAAGCAGTGCTTCGAGTGCGGCCAGCCCGGGGTGACTTACATCGACATCACGGTGGGCTGCTTCGTCTGCACGTCATGCTCCGGAATGCTGAGGGGGCTGAACCCGCCCCACAGAGTCAAGTCCATATCCATGACAACCTTTTCCCAACAGGAAGTGGAGTTTTTGCAAAACCATGGCaacgagGTTGGAAAGAGGACCTGGCTCTGTACGTTTGACCGGAAGACCGACGGCTGTTTTGACACACGTGATTCGCAGAAGTTTAAGGAATTTCTTCAGGACAAGTATGAGAGGAAGAAATGGCATTTTTCTAAGAGTAAGGTAAGGAGGGATGTGGAGGGTCCATGGAGTCCAGGAGTTCAGCCTGTACCTGCTCCCCATGGCCCCGCTCAGAACCAGCCTCCCCTCGGACACCCCCTGAACCCTACAGCACGTCCCACACGCACTCTGTCGCAGTCTCAGATATCATCATGGGATAGAGCTCCAGTTGTATCCCCGGCTGACGTCCGTACGGAGGTGTATACAGCTCGGCCCACTCGATCCCAGAGCTTTAGAGACCCCCATATTAAagatTCTTTGTTAAGTGGGATGGAAAGGCAGAGGCCAGGAACGATTTCTCCAGCAATGGGCCCCCAGAGTCGCCTTCCCTCTTTCCCTGCCCTTCCACGTCCTTCAGGTCGCACAGTGTCCTCAGGAGGTGGAGCTCCATTCAGGGCCTTCCCTAAATCTCTGAGTTTGGATTTCGGGGGGCTTGCTCCAGCCCACAGTGCCCTAAACCCCCCAGCCCCACCCACTGTCTCTCAGGATAGGTACGCTGCCGTGTCTCACCTTGACAAGGTTTTTGCCGACACCACACCTGCCACAGtcgtCTCCACAGCTCCCTCTGGTGGCCCTCCACAGTACAGCACCCTTTTTGGCAACAGGCTCTCTTCTAGCTCCACACCTGCAAGCTCTCCAGGGGTTCCAGAAGTCACTTCTGCTCCTCAGACATTTGCAAATTTCCCAAATCCATTCACTTCTACAGTCAGCAGCTCGCAGCCTGCTCTCTCCCCCAGCAACCCCTTCAACAGCACAGCTGCAGGTGATTGCAGTACTCTCGTCTCACCATCACCTTCAGCTGTCTTCCCCCACTCAGCCACCTTTCCTGCTCCCACCAGCCAGAATGCTTTTTCACATGAGCCTGCCAATAACCAGGAAGCTAATGGTTTCACACCCTTCCCTGCCTCTGAGTCCACCTCCAAAGTTCAGCGACCCATGTCCGTCAACCCATTTACTGGGAATGTTTACCCCACCAGAGGAGCGTCACTGAACCCTTTCATCTGATCCCAGCACCACTCGGccagcgagaaagagagagagacagatcgagagagagagagagtgagagagaatgtgtgtgtatatatatctatatataagagagagagagaaagagacagaaagctCTTTAGAGCTAGTGCCATTTTCATGCCTCCAGAGAATTCCTCCGTCAGATAAGGGGGTAAATACACATGCCTGCCCACTTTATTGAGTGTTGGTtaatgtgtgtaatagagtgtattacttttgttcatatatgtgtgtttgtgtgtgagtgtgagagtataTGTGTCTATCATTTTGCACCACATGCTACAAGTCAAAGCTTTATGTATgcatttgtctgtgtgtgtgtgtgtgtgtgtgtgtgagaatgttttTGCCATTGGATGTATTTCATAGTATAAATTGTTTCATGGTGTAATAGCAAAAAGGCCATTCCAgatgcgtgcacacacacacaaacacacacaattacacacacagacccagCTGCTTTGACCTCCTACTTCTGCCCTCTCAGTAAGACATCTCTAGCCTTTAGCCTGCGCCCAAGCTAAGCTGCATTTCAACCAAGACGCTCAAGTATCAAGTTCCAGGCTTTATAGAGTGAACGAGAGCAGTAGGCGACTTAAGCTTCAGATATTCTTAATACGAGCTGTGCGTTTTTTTCCTGAGCCCTTGTTCCGGTAGCCTTCAATTCTCTGATTTAATGCATGTTAATATAGGAGAGTGTTCAAAAGAGGCTGCAGGCTTTCTCATACgtttgtatttgtatgtatgcAAGgcctttttgtatttatttcaacatgagtgttaattttttttatttttatattgatttgatcatttttaacaccttttttaaaGCGTTTGTACGTGCGTTGTCGGACTGCATGCGCTTTGTGAGCGAGAAGCTGTTGAATGTACGGcaaattcagtgatttaaaaaaaaaactaaacagtgTTATTTGTGTTATTCATGTTTATAATATTCAGGACCAAATATCGTCAGGTTTCATaatacatgtgttttttttctccagactTTTTGTACTGATTTGTTTAGAATGTCCTTGTAGAAGAATGCATAAAAAAAGCTAttcctatttttgttttttgcgtCAGTGTGTACCTAATGGAGTGTTATACTTTATGGAAAAACCAACCCTAAGCATCACCTTGAATTTGCTGCTTCAAGATTtcatgcaatatatatttttcaaatagcttttgcatttatattttttatctgtgGGGAATCATCACTGCATTATGAATGTATTTGCACTTCTTTAGGGCTTTAAACTGGAAATTAAAAAGGAAAGCTATTACTTTCA

Function

NR:

description
PREDICTED: arf-GAP domain and FG repeat-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198822 False 1042 lncRNA 0.38 2 36666200 36706281
XM_007241997.3 True 3238 mRNA 0.48 14 36666199 36686553
XM_007241998.3 False 3205 mRNA 0.48 13 36666199 36686553

Neighbor

gene id symbol gene type direction distance location
LOC103042975 LOC108442825 coding downstream 6602 36586963 ~ 36659597 (-)
LOC103044904 LOC108442822 coding downstream 125466 36532866 ~ 36540733 (-)
dvl2 dvl2,LOC102795886 coding downstream 144564 36500391 ~ 36521635 (-)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 167747 36461808 ~ 36498452 (-)
LOC103046032 LOC108442818 coding downstream 220532 36430924 ~ 36445667 (-)
slc16a13 slc16a13 coding upstream 18692 36724973 ~ 36741079 (-)
bcl6b LOC108442830 coding upstream 37915 36744196 ~ 36752978 (-)
LOC103044717 LOC103044717 coding upstream 80298 36786579 ~ 36788965 (-)
tm4sf5 tm4sf5,LOC108442834,LOC106533332,LOC108410825 coding upstream 120082 36826363 ~ 36833257 (-)
LOC103036692 NA coding upstream 255298 36961579 ~ 36974436 (-)
G146922 NA non-coding downstream 2025 36663482 ~ 36664174 (-)
G146892 NA non-coding downstream 222148 36440755 ~ 36444051 (-)
G146875 NA non-coding downstream 347992 36316664 ~ 36318207 (-)
G146754 NA non-coding downstream 500218 36161600 ~ 36165981 (-)
G146753 NA non-coding downstream 502875 36159756 ~ 36163324 (-)
G146927 NA non-coding upstream 12276 36718557 ~ 36719947 (-)
LOC103040824 NA non-coding upstream 93720 36800001 ~ 36813698 (-)
G147046 nat8l,LOC107753918,LOC107668697,LOC107588165 non-coding upstream 370048 37076329 ~ 37139272 (-)
G147079 NA non-coding upstream 528543 37234824 ~ 37235910 (-)
G147089 NA non-coding upstream 582878 37289159 ~ 37289403 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other downstream 327535 36298639 ~ 36338664 (-)
G146686 NA other downstream 781878 35883609 ~ 35884321 (-)
G146584 paip2b,LOC103027680,LOC108428580,LOC108263850 other downstream 1187005 35463197 ~ 35479194 (-)
hspa12b cct7,hspa12b,LOC107697251,LOC107583281,LOC107721663,LOC107721672,LOC107697252,LOC107744271,LOC107691462,LOC107571934 other downstream 1230492 35404898 ~ 35435707 (-)
LOC103031173 adam19a,LOC108428568,LOC108267694,LOC107570237,LOC107660716,LOC106608513 other downstream 2289529 34229920 ~ 34376670 (-)
poln poln,haus3 other upstream 378715 37084996 ~ 37246025 (-)
G147092 NA other upstream 645797 37352078 ~ 37391735 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other upstream 802380 37508661 ~ 37514452 (-)
mrpl52 mrpl52 other upstream 1017103 37723384 ~ 37726809 (-)
LOC111194363 LOC108267931 other upstream 1134601 37840882 ~ 37858571 (-)

Expression


Co-expression Network