Gene
RNA
| Item | Value |
|---|---|
| gene id | G41513 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 3283664 ~ 3288736 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47131 | False | 4399 | lncRNA | 0.30 | 3 | 3283664 | 3288736 |
| TU47132 | True | 4181 | lncRNA | 0.41 | 3 | 3283664 | 3288736 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_03232003_03242938 | NA | coding | upstream | 40302 | 3232003 ~ 3243362 (+) |
| CI01000006_03164803_03183473 | PCNX3 | coding | upstream | 99945 | 3164189 ~ 3183719 (+) |
| CI01000006_03102358_03152576 | NRXN2A | coding | upstream | 130795 | 3102358 ~ 3152869 (+) |
| CI01000006_03016090_03016706 | NA | coding | upstream | 266350 | 3015137 ~ 3017314 (+) |
| CI01000006_02774064_02933983 | NRXN2A | coding | upstream | 349681 | 2774064 ~ 2933983 (+) |
| CI01000006_03294091_03298089 | SLC29A2 | coding | downstream | 5252 | 3293988 ~ 3298671 (+) |
| CI01000006_03319103_03319306 | NA | coding | downstream | 30367 | 3319103 ~ 3319520 (+) |
| CI01000006_03327370_03334117 | RIN1A | coding | downstream | 38634 | 3327370 ~ 3334702 (+) |
| CI01000006_03350988_03356496 | NA | coding | downstream | 62028 | 3350764 ~ 3357157 (+) |
| CI01000006_03412397_03437333 | MARK2A | coding | downstream | 123661 | 3412397 ~ 3437710 (+) |
| G41502 | NA | non-coding | upstream | 6660 | 3269964 ~ 3277004 (+) |
| G41543 | NA | non-coding | upstream | 20222 | 3258049 ~ 3263442 (+) |
| G41614 | NA | non-coding | upstream | 33594 | 3249123 ~ 3250070 (+) |
| G41606 | NA | non-coding | upstream | 84899 | 3198562 ~ 3198765 (+) |
| G41605 | NA | non-coding | upstream | 85378 | 3197836 ~ 3198286 (+) |
| G41520 | NA | non-coding | downstream | 11349 | 3300085 ~ 3315791 (+) |
| G41506 | NA | non-coding | downstream | 50503 | 3339239 ~ 3344280 (+) |
| G41526 | NA | non-coding | downstream | 68799 | 3357535 ~ 3359262 (+) |
| G41542 | NA | non-coding | downstream | 74259 | 3362995 ~ 3365567 (+) |
| G41566 | NA | non-coding | downstream | 160714 | 3449450 ~ 3455035 (+) |
| G41591 | NA | other | upstream | 444243 | 2836167 ~ 2839421 (+) |
| G41424 | NA | other | upstream | 623094 | 2645662 ~ 2660570 (+) |
| G41170 | NA | other | upstream | 1587843 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 2790638 | 488407 ~ 493026 (+) |
| G40767 | NA | other | upstream | 2800329 | 360009 ~ 484185 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | downstream | 440494 | 3734554 ~ 3736035 (+) |
| G41996 | NA | other | downstream | 1828470 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 2481353 | 5770089 ~ 5771775 (+) |
| CI01000006_06104927_06109730 | NA | other | downstream | 2819748 | 6104927 ~ 6109820 (+) |
| CI01000006_06122278_06122736 | NA | other | downstream | 2833299 | 6122035 ~ 6122751 (+) |
