LOC111194395


Basic Information

Item Value
gene id LOC111194395
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37455012 ~ 37461192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199286
AAAGTGGATCCAGGACCGACAACACTCACATCCAATCAGATTTAGCGTCTCTCACTGACGTCATTACAAGCGCGACTGTCCAAAAAGACCGCGGGGAGATTCAAACACAAGTAACTGCTGTGCCCCCTTGTGCGTTCAAGCTGTGCGGTGTGGAGGAAGGTTTTTGGCTGGTTCTAGGAATAGGTGACTGGATGACCTACTTAACGTTGTCCTTAGTAAAGCTGATGATTACTTCACTGTGATAAAAGCCCTGCAGGATGCTGATCGTGTCAAGAATCCAATAGGTTTGGTTCTCAGAATCTTTTACATTCAGTTTCCCAGATGATGGAAAGTGGTTGGAGAGACAAAATAATTGTAAAGAGAGATCGGGGAATTTGTCAATATCAGGTCCCCTCTCTGTTACACACTGTGTACAGGGccatctaaaaaaattagaatatctttggaaaaaaatgttaatttatttcaataattcagttaaaaatgtgaaactcattatgtagatgtgttacacatagactgatctattttaagcgtttatttactgatgatcagtgatggtttggagagacatgtcatctgctggtgttgattcactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgcttcaatCTGCTGACTGCTTtcatggagatgtggatttcattttccagcaggacttggcacactgcccacactgccaaaattaccaactggtcttatataatgtaattttctgagacacagaattctgggttttcattggctgtaagccataatcaacaataaaaaaaataaacgccTAAAATAGattactgtgtgtaatacatctatataatataagagtttcacattttaactgaattactgaaatagtcACTTTTCATAGCTGAAATGATTTTAAACACACATGACTGCATTTTAAAAGCAGAACTGGAAACAAGTGTGGGATTATTCAGCTAAAGCTAACAACACAGATGAAAGTCAAAGATTTTAACCACAGTgtcaaatgtaaatataaaactagTTCCCTAGCTCTGTAAACATAAACACTTTacttgaaaatattggaaaatgtATCCACAGATAAAGAAAAGTCAGAAACAGAAGAACTTCTTGATTTTccacagaaaagaagaaaagaaaacattaatgtTGTTCCATTGGAGTATGTGACTATCCTTTAATATCTTAATCTCTTATGACAATAtgaaaaatgcagttttaaaaagatttctct
>TU199287
AAAGTGGATCCAGGACCGACAACACTCACATCCAATCAGATTTAGCGTCTCTCACTGACGTCATTACAAGCGCGACTGTCCAAAAAGACCGCGGGGAGATTCAAACACAAGTAACTGCTGTGCCCCCTTGTGCGTTCAAGCTGTGCGGTGTGGAGGAAGGTTTTTGGCTGGTTCTAGGAATAGGTGACTGGATGACCTACTTAACGTTGTCCTTAGTAAAGCTGATGATTACTTCACTGTGATAAAAGCCCTGCAGGATGCTGATCGTGTCAAGAATCCAATAGATAAAGAAAAGTCAGAAACAGAAGAACTTCTTGATTTTccacagaaaagaagaaaagaaaacattaatgtTGTTCCATTGGAGTATGTGACTATCCTTTAATATCTTAATCTCTTATGACAATAtgaaaaatgcagttttaaaaagatttctct
>TU199288
gtgcgtgttgttgatccagggccatcgtgcgcgtttttttttttttttaaactaacattttaatatgctgatttttgtctgctctgtaTTGTAAGGTCACACTTCTGGCtttatgttttagtttcattttaaactaatagtatagtaatagtatagccatttttttctgaattgcacccagaaggaagtgtgtgATAGCAATAATATTCGGAAGGAAGATAAACGTTACCAGGAACACATTATTCAACATTTAGACTAAAATCCAGTATTTCATTAAGCTGCACATACAGACTTAGTGTTTAACACACCATGTCTGCAGTTTCAGCATGGAAAAATGGTAAATTGGTGACTGAATCTGGTGAAAGCTTGCAGTACAGCGAGTAAATattgtatctttttttctttcttttttttaaactgatttgatatgtattattattgctgATCTGGGCAAATTTTATTAGTAGTTTTGCAGttctttttaaagtaatttgtgGCAGTAATGTCAGTAGTAgcagattaaaaataaatgtttaaaattattgcaattaaaTAAGAAATTGGCGATGAGGTAAACAAATGTAAATTGATTTGTaaacatatatctatttatttctccatgatattgtatatttttatatcgaTTTTTATATTAcctttattttctaatttgtacagTGTACAGTTGGACCAAGTCttatagctgtatatttataaaattgtacttctttaggtttttgttaaaaataagaaataaataaagacttttacaTTGCTTTATAACTTTGATTTTATATGGtttatataacatatttacTTCCTTCATGACTGGAATTCACTGTGTTGGTAATCCTTTGCACGCAATAAGCTCCAAACCCTGCCCGGTTTTAATGCAACCTTGACAAGGCTGGCAATAATTAATCAGTTAATTATGACCAGTTATATTTAGTCACAATCTTGTcattttagacatttaaaaagcttatAGGCTACTAATtgtgcatttacacatttgCAGTGATGAaccataattaaatattattcttCCTTACCTTTCAGGTTTTTGGCTGGTTCTAGGAATAGGTGACTGGATGACCTACTTAACGTTGTCCTTAGTAAAGCTGATGATTACTTCACTGTGATAAAAGCCCTGCAGGATGCTGATCGTGTCAAGAATCCAATAGATAAAGAAAAGTCAGAAACAGAAGAACTTCTTGATTTTccacagaaaagaagaaaagaaaacattaatgtTGTTCCATTGGAGTATGTGACTATCCTTTAATATCTTAATCTCTTATGACAATAtgaaaaatgcagttttaaaaagatttctct
>XR_002651064.1
CAAGGCACGATCTGATTTCCTCGGGTTGCTGTTGTTCCTGGAACAACGTGAATAAAGTGGATCCAGGACCGACAACACTCACATCCAATCAGATTTAGCGTCTCTCACTGACGTCATTACAAGCGCGACTGTCCAAAAAGACCGCGGGGAGATTCAAACACAAGTAACTGCTGTGCCCCCTTGTGCGTTCAAGCTGTGCGGTGTGGAGGAAGGTTTTTGGCTGGTTCTAGGAATAGGTGACTGGATGACCTACTTAACGTTGTCCTTAGTAAAGCTGATGATTACTTCACTGTGATAAAAGCCCTGCAGGATGCTGATCGTGTCAAGAATCCAATAGATAAAGAAAAGTCAGAAACAGAAGAACTTCTTGATTTTccacagaaaagaagaaaagaaaacattaatgtTGTTCCATTGGAGTATGTGACTATCCTTTAATATCTTAATCTCTTATGACAATAtgaaaaatgcagttttaaaaagatttctctccatgtgcatttttttaaaaactttatagcAGCTTTCATTTCTACGCCATGCACATGTAAGAGCTGAGTgtgtaaataacaaatattgTTCTTAAAGAAAGCAAATAGTTGTTCTATGGCATCACTTGAATCTACTGTAAACTCTTAATTATTAAATgtcatgattttttattttaaatgtacaatgtcCTAAAGGGTTTgatgtttaataattaaaatttattgtgactggaaatgttacaaataagaTGCTTcctgttaaattatttttaatcttcatattcatgtttttgtacttttaactagttttgtgtattatactgtatttaactaATGCCAGTGCATGAATGTTCTCTGATCTGAACatgcataaataaaatcaataaatacaaattcttTAAGCAACGTTTTATTAAAAGAA
>XR_002651065.1
CAAGGCACGATCTGATTTCCTCGGGTTGCTGTTGTTCCTGGAACAACGTGAATAAAGTGGATCCAGGACCGACAACACTCACATCCAATCAGATTTAGCGTCTCTCACTGACGTCATTACAAGCGCGACTGTCCAAAAAGACCGCGGGGAGATTCAAACACAAGTAACTGCTGTGCCCCCTTGTGCGTTCAAGCTGTGCGGTGTGGAGGAAGGTTTTTGGCTGGTTCTAGGAATAGGTGACTGGATGACCTACTTAACGTTGTCCTTAGTAAAGCTGATGATTACTTCACTGTGATAAAAGCCCTGCAGGATGCTGATCGTGTCAAGAATCCAATAGTCAATGGGTCCCAGGAACTGGAGCTCTTCTGAGTGCGATCTGtacaaaaatatagaatatgTCTAGATTTTAATCTGtatcacactcactctcacacacatacctaAAACTCCATATTGGTCTACACAGCTTTTTCCTTCAAGAATGTTTTCTGCAAACTgtatcaataaaaaacaagcatgATTAATGAGAAATTCTTAATAAAGTGAGTAAACATTGCAGATACAGTGTCTTTAATATTGTTGGAcagatttttctgtatttacttttggTTGTGTGGTTTCCCCCaaacaatttttaatattttattccgTTGTGAAGAAATCAGCACCAATGTATTAGAGAAACATAGAACAGTCATGTTAACGTAcgactaaagaaaaaaatttaaaacgtGAAGGCTCTCAGGCAAGAAAACAAAATTCTGTTAAAGTTGCAATTGTTAGAACACaggaaatacatcaaatacAAATGAATAAAGTAGAATTATTGATTGTACCACGTGTACTCCATACGAGTGTCCATCTTGCTGTTGTGGATGTTTGACACTGAAGATTGTCCAGTTGTCTTTGCAACCTCTGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199286 False 1279 lncRNA 0.36 2 37456996 37461139
TU199287 False 438 lncRNA 0.40 3 37456996 37461139
TU199288 True 1338 lncRNA 0.31 2 37456996 37459174
XR_002651064.1 False 912 lncRNA 0.34 3 37456575 37461192
XR_002651065.1 False 922 lncRNA 0.39 3 37455012 37461192

Neighbor

gene id symbol gene type direction distance location
svep1 svep1 coding downstream 31871 37246071 ~ 37423141 (-)
nelfa nelfa,LOC107562310,LOC107691925,LOC107741467,LOC107753914,LOC100380775 coding downstream 417437 37027520 ~ 37037575 (-)
LOC103036398 tesk1 coding downstream 449254 36974535 ~ 37005758 (-)
LOC103036692 NA coding downstream 480576 36961579 ~ 36974436 (-)
tm4sf5 tm4sf5,LOC108442834,LOC106533332,LOC108410825 coding downstream 621755 36826363 ~ 36833257 (-)
LOC103039127 NA coding upstream 3 37461195 ~ 37466252 (-)
LOC103042927 NA coding upstream 5642 37466834 ~ 37489535 (-)
LOC103040682 nedd8,LOC103040682,LOC108440049,LOC107562413,LOC107588156,LOC107384241 coding upstream 61041 37522233 ~ 37525107 (-)
LOC111194362 NA coding upstream 200484 37661676 ~ 37672030 (-)
lrp10 lrp10 coding upstream 213662 37674854 ~ 37685722 (-)
G147109 NA non-coding downstream 7964 37446806 ~ 37447048 (-)
LOC111194392 NA non-coding downstream 57960 37395396 ~ 37397052 (-)
G147091 NA non-coding downstream 58001 37386898 ~ 37397011 (-)
LOC111194393 NA non-coding downstream 66418 37387413 ~ 37388594 (-)
G147089 NA non-coding downstream 165609 37289159 ~ 37289403 (-)
G147293 NA non-coding upstream 56881 37518073 ~ 37519166 (-)
G147312 NA non-coding upstream 89057 37550249 ~ 37596991 (-)
G147314 NA non-coding upstream 101615 37562807 ~ 37565202 (-)
G147321 NA non-coding upstream 123071 37584263 ~ 37601397 (-)
G147320 NA non-coding upstream 123426 37584618 ~ 37602922 (-)
G147092 NA other downstream 63277 37352078 ~ 37391735 (-)
poln poln,haus3 other downstream 208987 37084996 ~ 37246025 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other downstream 748731 36666199 ~ 36706281 (-)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 other downstream 1116348 36298639 ~ 36338664 (-)
G146686 NA other downstream 1570691 35883609 ~ 35884321 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other upstream 47469 37508661 ~ 37514452 (-)
mrpl52 mrpl52 other upstream 262192 37723384 ~ 37726809 (-)
LOC111194363 LOC108267931 other upstream 379690 37840882 ~ 37858571 (-)
LOC103047699 NA other upstream 443700 37904892 ~ 37910873 (-)
LOC103040134 NA other upstream 1545794 39006986 ~ 39012417 (-)

Expression


Co-expression Network