G147386 (vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288)


Basic Information

Item Value
gene id G147386
gene name vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38003479 ~ 38009023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199452
TTCCTCAAAAGCTTCATTACGAGTTGCTCATTCAGTATTTAATGGATACAATGTGACAAATAAATACAGATGAGAGAcagtaggaaaaaaacaaaggagAAGAAACAGCAGGTTTAAAAGGAGatgtgagctgtggagaaagagaaggagagaaagacaaGAAGCGAGGGGAAGGAGTCTCAGGATAAACGGGAAGATTGACCGATGAACAAAGACATTCCTTCTGAGCACTTGCCCTCGCCATTCACATGCTCTCTCCTCCCAAGCTCCTGGCACATTCAGGATATTCACTAATTAGTACAAGCCTGCCGCAGACAGTAAACAGCTTAGCAAGCACTCAGTGTCATCATCATCAGTCAATAAGTGAAACACAAACTTTTgattataataaaaatcataGAAAAGAAACTGCTGCCGTCACTTCtgtttgatttcttttttcctttttacttgaaaaaatattttaaaaagtaacaaatcaatAGATAACAGTGTGGAAGTAGGTGGACACATGGGGCAGTTGGTACTATCAGGGGTGAGAGTTTTGGGGTGTGGTCGGGGATGGAAAAGCAATGCCCCTCCTCTAAGACTTTTCAGCAGATTTGAGGAGGTTGTCTTTGCTCCTCCTCTTGACGTCCCAGTTGTAGACACGCGCCATATTGACTTCAGTGGTTGTGAACTGGTCTCGGAGGAAATCCAGGTCCTCTTCTAGGGACTCCAGGTTTCGGGAGGCTGTGGCGAGGTTCTTCTCCAGGAGTGACTGGGCTTCGTCTATGTCATACTCCAACATTACGTTTGCCTTTTTCAGAAAGCGATCATATAAGAACATGCAATGAAAATTGTATATTGTatgaaaatacagtataagCTGCATCCCAAAACCCACAGTGGGCCTTTTCTATGAAGACTCCTTTTTAGTAGCTTACTGGTCACACATTTGCcacagaaaatggaaaaaattttagactgtgttttttcctagtttttaaagttctgttttttttaatcctaaAATTGTGGACAAATGTGAGCAaagagtgttttttaataagattctatagtactttttaagttattaatgcctcgattTAAATGTctgggctctccagattctaccaaagaaatgtgaagctactttgagcctggataacggtgtaaaaagcgatttattggggcaaaatatgccctgaCACGGTTGTACAGAGTGCctggcaaaaagcacaaaataactgggtctcagaaagctgcaggagagtggTGGTGGGCTGTTTAACAAAGGTATAACTTTTaagcatgttttactacaccaaaagtcaattaaaGTTCTCCTTTGAGCCAGCATTGCTCCTCAGGTGTGAGCTGAATACTTACCCCAAGCCACAAACACACTTTATCTGTGGGAGGGACGGAGGCCTTGCAGTACACGTTATCAGCCAAAAGGAAGTGAGTCGCCATTGGATCTGTAGTGTCCTTTTTCTTCTGCATGTGCCGTAAGATTTCTAACGTCTGCTTGATTTGTGGAATCTGGCTTTTCAACcTGAGTTTCTTCTGGGACAGGTTAAGctccatatatttatatttctgatACTGTTCATCGAGCTTCCTTAGTACAGCATCTGCTGTGTCATTGCCGGGCTGCTTCATAAAGGAGTCCACATCCTcCACGAAGATCGCTTCGGGGATCCCGAGGTGTTTTTTCTTGCTCGCAGCTCCAGCATTGCTGCTCTCTATGGTCGTCGCCATTTTGGAAAGACCCGTAGCCCTTCCTCTTTAG

Function

symbol description
vbp1 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule-based process and tubulin complex assembly. Predicted to act upstream of or within protein folding. Predicted to be part of polysome and prefoldin complex. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; immature eye; myotome; neural plate; and optic tectum. Orthologous to human VBP1 (VHL binding protein 1).

NR:

description
prefoldin subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199452 True 1774 lncRNA 0.42 5 38003479 38009023

Neighbor

gene id symbol gene type direction distance location
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 6997 37987447 ~ 37996482 (-)
LOC103046269 NA coding downstream 34401 37944839 ~ 37969078 (-)
LOC103047381 NA coding downstream 104578 37887683 ~ 37898901 (-)
LOC107197638 NA coding downstream 169474 37829318 ~ 37834005 (-)
LOC111194218 NA coding downstream 178829 37823208 ~ 37824650 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 6559 38015582 ~ 38027404 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding upstream 144799 38153822 ~ 38296144 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 343715 38352738 ~ 38403259 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 399821 38408844 ~ 38609892 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 819654 38828677 ~ 38845998 (-)
G147359 NA non-coding downstream 191134 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 395594 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 400557 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 402082 37584263 ~ 37601397 (-)
G147312 NA non-coding downstream 406488 37550249 ~ 37596991 (-)
G147390 NA non-coding upstream 13032 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 32429 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 84489 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 116631 38125654 ~ 38213359 (-)
G147427 NA non-coding upstream 218488 38227511 ~ 38227978 (-)
LOC103047699 NA other downstream 92606 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 144908 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 276670 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 489027 37508661 ~ 37514452 (-)
G147092 NA other downstream 611744 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 997963 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1004979 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1020975 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 1032570 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 1091075 39100098 ~ 39104914 (-)

Expression


Co-expression Network