G147405


Basic Information

Item Value
gene id G147405
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38125654 ~ 38213359 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199474
aaaaaatgattttattttgaaagaatGAAGTAAAACAAAAGCCCATGATTTTATGTAATATGCATTTTCCATGcgtatttaaatcattttataattgcataaataaataaaaaatgtacaaagggGTTTCTCCACATAAACTTTTGGAAGGCGTTTTTCCCCCATTCTCCTTCTCATTTGGCATTTGATGATGAAACTACTAACATTTGCAGCCTTCCACCCCAGGGCTAAACACAGACATGACAATGTTTCTATTGTACATTTCATATATAGACCtatatataaatgcaaatatctcttgatcagaaaattaaaagctaaataaagaaaaaaaagaagaaaaaaaaattataacatgGCTTTCAAACCTATTACTAACCAATAACCAGCACACAAATTAAACAGATTATTAAatgaagtagaagaagaaaaacatgtgcAACAGCCCTGACCTCCCTCTTAATATCTCCCTCTGTTCCTGTCCTGCAGGGGGTGGGTATAAAACACACTGCAATAGATGGCGGAGGAGTCCCACAAGCTGTTCTAaacagacatgccaaaaatcatgggatagcagtgtgtaaaGTGATCATGAAATGTTCGTTACCTCTGGGGGCGGCTtggaaacacccacacctgtacacTGTACACTGGTCAGCgtgttcatggcaaggcaatgtaaattatttgtttGAGCGAGGCCTGActgtgtgtaccaggaatacatcacagaaggcaatctgaagaTTACTGACCACACATCAAAATGGGCAGAGACCAGCTCAGTGTGATTTGATAGAAATACTAAAGTGCTTAGAGATGCCGTTCATCACCACAGCTGCTGGTGATAAACCCTATCCCTTGTTCTTGAGATGGAAACAAAAACGACTCGTTTGAGAAAGCGCTGAAATATCTAGCAGGTAACATCTGTAATCCTACAGACCAACCAGACTGGACTAGGCTTGGGCTGACTGGGTGGGGAAAGCATTCAGCTTGTGGCTCCATGCCCAAACAAACAGCGCCCTGAGGCGTTTCAGTaacatacactctaaaaaacaaaagcaagatgGGTTCTTTGGAGCTACGCCACTGAAGAACCACTCCTAATTTCAGAAAGAACATTTCACTGGTTGGATAAGAGCATTTTGCGGTCTTATATGCATCATAAAGGTTCTATATCGATTAAAGCCTTTCCCTAGAACCATTTAACCTTTGTTTTTAAGAGTTCTAATAGGTAAACAACATTTACTACGGTGTTCTCTGCCACACTAGCACCAAATCtgatttagaaatgatcaattCCCTTAAAGAAAGTCCTTTACAACATGTGAAGATACCCTGGGAAGCTttacaatcagaaaaaaatgagacaaacTATGAATAACAGAGTAAAACAAGTATGCATGGTTGTGTTAGAACACCCTGTTGCGGTGTGtgcggatgtgtgtgtgtgtttgagagcacaATTTCAGACACTGAGGTGAGCAGTCATGACAGAAAGACACCCTTGCTCCTCCAGTATGCATTTCTCCCGCTCTTCTCCGTCTGTGCTGCTGTATCCCTTCTCAGTGTCCTCCTCAGTCTCCCTGAATTATGTGGTGGATGGTCTTCCTCTCGATCACTCGCTCAGTGGGGTTTTTGCCGTCCTGTTTGGCACTCCTCTGCACAACGCTATTACATGAACTGCATCTGCACCAAAGAAAGGCGAGACACCAGGTTAAAACCCAGACCGGTTTTTAAAGCGGTTTAAAGTCTGCAAATTCCTGCTGCAGCTGCAAAATCCCTAACAGGATTATTGGAGAATTTCTGTACTTTTCGGGATTTGGATAATACCACAGgtattttaacacatttctcTAAGTTGGGACTGTTGGGAGTGACATTCAAAATACAGTAAAG
>TU199475
agagagaaagagagagagggagggagagagaaagaaaagagacaaagagagagaatggcAGCACACCTTTAAATACATGTACACATCCATGTTAAGATACCTTCCTATCTAAACTGCTGGATCTGACTCTCAGAAGTGTGGTGAGCTTGCTGCTCCACACCACCAGAGGGAGctaaagtaacaggaattactTTAATAAGTGCTATAATATTATGCCTTCACCAGGTTACGCTTGGCACAGGTTAGGCTTTGCAACAAGGTAATAAAACTAATAGATAGATGTGCCAATTTCTGCCACTTTAAATTACCAAGTCTTAACCGTGATGTCAGACCTTTGGCATATCACAAAAAAGTTCCTGATGGTAGTAAAATGAAGGAAGATCACAGGTAGTGTTGACAAAATGGGACACAAGACAGACCATTCAGCTAAACACAGGACAGTTAAATCTCTCTAGCAGCTTCTTTCAACCAATCTAGCTTAACTCAATAACCTCCACAATACAGGACGGATAGACGGACTGCTaaaaacaaacatgcaaaacGGAGGAAATGGACAGAAAAACAGCAAGCGTCAGACATCCAGAAATGCTACAGGAAACAGGCCCGCTAGACCTTAtgattaacaaaaaaagaaaaagctgtgCTCATCACTCTCTGTGCCAAAACACACTTCTACTTTTGAAAAAAGACGGACTCCCAGTGGATCTCCTCACATGCCTGCTTAACAGCTCCAACAAAGCACCACCTTTCCTCAGCCCACCTGCACTCTGTATAAACCAATCACATCTGCTGGTATTCCCTTACTACTCTGCTCAGTGCATTTCTATTTTCCAACAACACACCTGGCAGTGCAGCATAACTGGGAGAACCAAGTAGAATCAGTCAGCATGGCTTAGAGCAGAGAGTTCAGTCAGTAAGAGAGACTAGAATAGCATACAGTGCTATGTCTTGTGGTGCAACAGAAAAGAGGTGACGATCCAGCAGCTGCTGTAAACTCACTCTCAGGATTGAGAATTGGTTGCAgcaaactaataataaaaaaaaaaacactggtgcTGTAGATGCAGTTCAAAGGCTGCATTCACTGGTGgcactaatcaaatgaataggttAATCTTGCAGTGAAGAAAAAcggttgtgaaattctgtgaaactaacaacaacaataaatccATATTAACTGGTATtcgcttatttaggagtattttatctttttcagtaacacagatacAGATAAGTATCAGAGAATTGTCTTTCCCAGCATCACGTCACAGTCACAGTATCATATCTATCTTATTGTGGGAAACTTATCCTATTATAAGATGCTCTGGTTTTTAGCTGCAATATAGAAGTAATCTCTTTTGAGTCCATAAAGAACCTTGTTTGTAACTGAGATGTGTTGAAACAGTGTAGAGAAACTGTTCTTGATGcaaatgcctttaaaatcacACACATCTCCATAACAAGCATGGAACCTTTTCTAGCACTTTATTTGTAAGAGTCCAATAATTCCACTGACCAGCCAAAGGTCATGGAATACAGACTACAGACTGTGGTACTTCAGGGGACAATCTGTGAATGCACATatctgtatatgttgtgaggtgttaccttgtgaACGAGGTGGTAAGTGTGTTCATGTCAAGGTGACGTAAATTATCGGTCTAAAATGATTTTTTCGGATAATTCATAATGTTACCAGATAACAAATTTTAAGATTTCCAATTCAGTTGACaacaaattaatattattttcctCTGGAATCAACTGCAGGTGTGGAGGTGCTTTATATACAGCCTGTCCACAGATCACAGATCACCAATGGGCATTCTGCTGTTCGTTCATCTGAATGCCCGTcacgctctctcgctctctctatctccgcctctgctacactctaaaaaaaataaaacataaacatcaGAGGTGCTGTGCAATCGGCTGCAGTTGCTCATCATAGAGCATCTGGTCTTTGTGGTTCTTAAAGCATGCTGTacaagaagactaaatacaacctCTGCCTGATAAGATCTAGGCCTgtcctgtctgtgtgtgtatgcgtgtgtgtgtctaacAATTCTCTAGCCATGCCTGAATGATTCGTAGccactctgctgctgctgcctccttctcctcctcctcttctgtctctttctctcacattttCCTCCAGGGAGGTGGATAAAGGGGCGAGAGGAGCTAATTAAAGAGGCATCAAAGCATCACCTAGACGGCACGAGCGCACATACATCTGATCCAGTAAAGAGCAGAGCTCGAGTCTGGCCACAGTGGCCCAAACAGCCTCGCCATTACGTCTCTCGTCTCATCAGAGACAAAGGAAGAGACACAgagtgagaagaagaaaagggtaaaaagaaaacaaaaacaatgagtCTCTTTCATGTGGACGTCAGGGATTTGTTCCGTACGGGCTCCCTAACAAAACAGCCGTTCTTCGCCAACACTTCCACGACAAAGCTCACATTTAGTGGATGTTTGCCCGATCCGAGAGGGACAAACCAAAACTGGCAGACGAATTTCAGCCACTAATTTCAATTAATAATATTGGCACAAGCTCCTCTTCACACTCCTCACATCCAGGGAGATTATTTTAACATGGCTTTGTGCCGTGCAAAGAAAAAGGGGTGTGAAAGAGGTGGCATATGTTCACAGGGATCGTTAATCACAATTTCTGTAAATTTGGCAACTTCAACGAAAGCGGATTTCATGGCATTCgagcagggaaaaaaaaaattataacatgGCTTTCAAACCTATTACTAACCAATAACCAGCACACAAATTAAACAGATTATTAAatgaagtagaagaagaaaaacatgtgcAACAGCCCTGACCTCCCTCTTAATATCTCCCTCTGTTCCTGTCCTGCAGGGGGTGGGTATAAAACACACTGCAATAGATGGCGGAGGAGTCCCACAAGCTGTTCTAaacagacatgccaaaaatcatgggatagcagtgtgtaaaGTGATCATGAAATGTTCGTTACCTCTGGGGGCGGCTtggaaacacccacacctgtacacTGTACACTGGTCAGCgtgttcatggcaaggcaatgtaaattatttgtttGAGCGAGGCCTGActgtgtgtaccaggaatacatcacagaaggcaatctgaagaTTACTGACCACACATCAAAATGGGCAGAGACCAGCTCAGTGTGATTTGATAGAAATACTAAAGTGCTTAGAGATGCCGTTCATCACCACAGCTGCTGGTGATAAACCCTATCCCTTGTTCTTGAGATGGAAACAAAAACGACTCGTTTGAGAAAGCGCTGAAATATCTAGCAGGTAACATCTGTAATCCTACAGACCAACCAGACTGGACTAGGCTTGGGCTGACTGGGTGGGGAAAGCATTCAGCTTGTGGCTCCATGCCCAAACAAACAGCGCCCTGAGGCGTTTCAGTaacatacactctaaaaaacaaaagcaagatgGGTTCTTTGGAGCTACGCCACTGAAGAACCACTCCTAATTTCAGAAAGAACATTTCACTGGTTGGATAAGAGCATTTTGCGGTCTTATATGCATCATAAAGGTTCTATATCGATTAAAGCCTTTCCCTAGAACCATTTAACCTTTGTTTTTAAGAGTTCTAATAGGTAAACAACATTTACTACGGTGTTCTCTGCCACACTAGCACCAAATCtgatttagaaatgatcaattCCCTTAAAGAAAGTCCTTTACAACATGTGAAGATACCCTGGGAAGCTttacaatcagaaaaaaatgagacaaacTATGAATAACAGAGTAAAACAAGTATGCATGGTTGTGTTAGAACACCCTGTTGCGGTGTGtgcggatgtgtgtgtgtgtttgagagcacaATTTCAGACACTGAGGTGAGCAGTCATGACAGAAAGACACCCTTGCTCCTCCAGTATGCATTTCTCCCGCTCTTCTCCGTCTGTGCTGCTGTATCCCTTCTCAGTGTCCTCCTCAGTCTCCCTGAATTATGTGGTGGATGGTCTTCCTCTCGATCACTCGCTCAGTGGGGTTTTTGCCGTCCTGTTTGGCACTCCTCTGCACAACGCTATTACATGAACTGCATCTGCACCAAAGAAAGGCGAGACACCAGGTTAAAACCCAGACCGGTTTTTAAAGCGGTTTAAAGTCTGCAAATTCCTGCTGCAGCTGCAAAATCCCTAACAGGATTATTGGAGAATTTCTGTACTTTTCGGGATTTGGATAATACCACAGgtattttaacacatttctcTAAGTTGGGACTGTTGGGAGTGACATTCAAAATACAGTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199474 False 1899 lncRNA 0.40 3 38125654 38131878
TU199475 True 4305 lncRNA 0.42 3 38125654 38213359

Neighbor

gene id symbol gene type direction distance location
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding downstream 98250 38015582 ~ 38027404 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 129172 37987447 ~ 37996482 (-)
LOC103046269 NA coding downstream 156576 37944839 ~ 37969078 (-)
LOC103047381 NA coding downstream 226753 37887683 ~ 37898901 (-)
LOC107197638 NA coding downstream 291649 37829318 ~ 37834005 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding upstream 139379 38352738 ~ 38403259 (-)
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding upstream 195485 38408844 ~ 38609892 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 615318 38828677 ~ 38845998 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding upstream 714167 38927526 ~ 38961503 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding upstream 750379 38963738 ~ 38983217 (-)
G147407 NA non-coding downstream 2669 38093512 ~ 38122985 (-)
G147397 NA non-coding downstream 83983 38041452 ~ 38041671 (-)
G147390 NA non-coding downstream 103149 38022055 ~ 38022505 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding downstream 116631 38003479 ~ 38009023 (-)
G147359 NA non-coding downstream 313309 37811598 ~ 37812345 (-)
G147427 NA non-coding upstream 14152 38227511 ~ 38227978 (-)
G147478 NA non-coding upstream 182796 38396155 ~ 38396864 (-)
G147500 NA non-coding upstream 403444 38616803 ~ 38617057 (-)
G147503 NA non-coding upstream 404792 38618151 ~ 38618698 (-)
G147506 NA non-coding upstream 415041 38628400 ~ 38629110 (-)
LOC103047699 NA other downstream 214781 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 267083 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 398845 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 611202 37508661 ~ 37514452 (-)
G147092 NA other downstream 733919 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 793627 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 800643 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 816639 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 828234 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 886739 39100098 ~ 39104914 (-)

Expression


Co-expression Network