G147503


Basic Information

Item Value
gene id G147503
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38618151 ~ 38618698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199595
TGATCGTCAGCATTGCAAAGTGAGTGACTGAATGTTATTGTcacttaacctacatttcttaaaaatcaactaaaatccaGACTTTAGAGttatcacaataataacagtaataacccGGTGTTACATGCACAATATACTATTGGGCTTAGCCGAGCCCGGCACTGTTAATGCAGGGGAGTTGTAAAGAAATAGAAGCCCTGCACTCAGCAGCTTACCGATTTTGGGCCTTTTTTTGAACAAGTCACCAATATTTTGGGACAATGTTACCGCCGTTTTCTTCCGTTTTCGctccttgtcttcttttttacccattttgtCAAGTAACTTTCCCCTGATTCTTATTCTTTCCACAAGCTAAGAACAGAAACGGGGGAATTGCCGCCACCTACTGGATTGGTgtaaaacagtctgaacaaaatgtgtaaagagaaacattaacCATTTTTCTTACTCGTCACTACTCTGGGGGCAGGAGGGGAGTTGGGGTGGCTgagggggggatgggggggatcgaacgaacccttcgatcccccctggctacgggcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199595 True 548 lncRNA 0.44 1 38618151 38618698

Neighbor

gene id symbol gene type direction distance location
LOC103044140 LOC108434824,LOC108267122,LOC107691957 coding downstream 8259 38408844 ~ 38609892 (-)
LOC103028652 zgc:109889,LOC108434857,LOC107742291,LOC107691956,LOC107562726 coding downstream 214892 38352738 ~ 38403259 (-)
LOC103028971 si:dkey-172j4.3,LOC108434852,LOC108267497 coding downstream 322007 38153822 ~ 38296144 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding downstream 590747 38015582 ~ 38027404 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding downstream 621669 37987447 ~ 37996482 (-)
LOC103043213 LOC108410408,LOC108267136 coding upstream 209979 38828677 ~ 38845998 (-)
LOC103041964 clcn5,LOC108434858,LOC108267828,LOC106563682,LOC108279192 coding upstream 308828 38927526 ~ 38961503 (-)
LOC103042589 pygmb,LOC108434859,LOC108267457,LOC107753953,LOC107742296,LOC107562665,LOC107701539 coding upstream 345040 38963738 ~ 38983217 (-)
sf1 sf1,LOC107753954,LOC107659718,LOC107562691,LOC107588130,LOC107691964 coding upstream 367314 38986012 ~ 38997741 (-)
LOC103040853 LOC108434861 coding upstream 381397 39000095 ~ 39006229 (-)
G147500 NA non-coding downstream 1094 38616803 ~ 38617057 (-)
G147478 NA non-coding downstream 221287 38396155 ~ 38396864 (-)
G147427 NA non-coding downstream 390173 38227511 ~ 38227978 (-)
G147405 NA non-coding downstream 404792 38125654 ~ 38213359 (-)
G147407 NA non-coding downstream 495166 38093512 ~ 38122985 (-)
G147506 NA non-coding upstream 9702 38628400 ~ 38629110 (-)
G147514 NA non-coding upstream 20610 38639308 ~ 38681678 (-)
LOC111194220 NA non-coding upstream 129120 38747818 ~ 38751357 (-)
G147629 NA non-coding upstream 307687 38926385 ~ 38926799 (-)
G147637 NA non-coding upstream 404315 39023013 ~ 39025717 (-)
LOC103047699 NA other downstream 707278 37904892 ~ 37910873 (-)
LOC111194363 LOC108267931 other downstream 759580 37840882 ~ 37858571 (-)
mrpl52 mrpl52 other downstream 891342 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 1103699 37508661 ~ 37514452 (-)
G147092 NA other downstream 1226416 37352078 ~ 37391735 (-)
LOC103040134 NA other upstream 388288 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 395304 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 411300 39029998 ~ 39250697 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other upstream 422895 39041593 ~ 39061059 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other upstream 481400 39100098 ~ 39104914 (-)

Expression


Co-expression Network