G147645


Basic Information

Item Value
gene id G147645
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39149092 ~ 39151181 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU199792
ttattttcaaaaatgcaatttacaaatacaaaaaaataaatcaattaacaaTTTCCATGCAAATCCATTGTAAATCACCAATTTATGCACCTCTAATTCAAGTGCAGTAGAATCAATCTGCTCCCATTAaaggctaagctaaactaaactttaGATCATATCCAGGTTCTGATAAAGGTACTAATTTCATTCAGACCAAAGgtgaacaatatatataaatggtgACGATTTAAAAACAGTCCGTGCTAATACAATTTCACTGCTAAAGTTCAGAGTGCATAAGAGACATGCCAAGACACTTTGGTTCCCAAGGTAACCGTAGGTCTTAAGCTAATGCCACGTTACACGTTAACAGACTTGCACAGAACAAATATTCTGTAAGAGAGGAGCAACCCTACCAAACCAGGTCTGTTTGGTCATTTTCCTCCTAaagtgcatatttttttttataaatatagccCTGTAACTTTGAAGATCACTTATCTCGGTATCAAAATGCAGTGTCAAACAGAGAGGTAACCACAGAAACAACAGGTATACGTTACAAACGTTACGTTACAAACAAGCAACAAGCCAGCGAGTCCTCGTTTTTGAAGCTGTAGCAATGTGAGAGGTGttaattgagagagagagagagagagagagagagagagagaggagagagagagaaagagagagagggtataTCCACAGTGatatgtttgagtgtgtttgtgattcATAACCTGTCAAATTTTCTGGATGAATTGAAATGATTTCATAACTCGTTTAATGATCCGCATTGGCCTTGTCACAGCTTTGGCATAGTCTGTCATGCTTTAGGCAATAGGTGAGACACTGATGGATACAGGAAAGCTTCTGTTGTTGTTCATGATGTCATCCAAGTCTTCATCGTCAATGACCACTCTCTTGGAGCGGCCGATCTGGCCGAGTTTGGGggctctctgtgttctctgcgGAGGAGGCCGCATCTCAGCGCCGCTCCTCTGCGCCTCCACGCCGCTGTACAGCGGGCTGGGTCTGAGCTCGCACTCCGCCGGGGGCAGGAGCTCGGGCATTCCCGCCGTGCCGTACATTTCTGAGAGCAGTGTTTCCCGCGGCACTTCGTACGATGTCTTCATATATTCTCCCTGATTCGGAGGCGGCTGGGCTGGGGGGGCTGGAGCGCTGCGTCCGCGGTCACACACCGGAGCGGCTGGA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU199792 True 1200 lncRNA 0.45 2 39149092 39151181

Neighbor

gene id symbol gene type direction distance location
LOC103036164 LOC108434831 coding downstream 11913 39126899 ~ 39137179 (-)
LOC103036765 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 coding downstream 44239 39101117 ~ 39104853 (-)
LOC103037604 NA coding downstream 48317 39091555 ~ 39100775 (-)
LOC103037073 NA coding downstream 63914 39082567 ~ 39085178 (-)
LOC103037934 LOC108434867,LOC108267153,LOC107572570,LOC107753961,LOC107659726,LOC105903083,LOC107667731 coding downstream 79541 39065680 ~ 39069551 (-)
LOC103035548 cldn7a,LOC103035548,LOC108434869,LOC107667734,LOC107753993,LOC108268068,LOC107572167 coding upstream 2056 39153237 ~ 39161707 (-)
LOC103034907 chrnb1l,LOC108434832,LOC108268067,LOC107753962 coding upstream 5968 39157149 ~ 39195199 (-)
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC103358387 coding upstream 47681 39198862 ~ 39244281 (-)
LOC103028039 tmem102,LOC108434872,LOC108267795,LOC107750772,LOC107659729,LOC107564774,LOC107560290 coding upstream 316182 39467363 ~ 39484662 (-)
pop7 pop7,LOC107750778,LOC107753970,LOC107595279,LOC107560286 coding upstream 694709 39845890 ~ 39848520 (-)
G147643 NA non-coding downstream 7115 39139021 ~ 39141977 (-)
G147649 NA non-coding downstream 46878 39078300 ~ 39102214 (-)
G147637 NA non-coding downstream 123375 39023013 ~ 39025717 (-)
G147629 NA non-coding downstream 222293 38926385 ~ 38926799 (-)
LOC111194220 NA non-coding downstream 397735 38747818 ~ 38751357 (-)
G147691 NA non-coding upstream 108716 39259897 ~ 39260652 (-)
G147693 NA non-coding upstream 111644 39262825 ~ 39265172 (-)
G147698 NA non-coding upstream 171410 39322591 ~ 39323343 (-)
G147700 NA non-coding upstream 231532 39382713 ~ 39388107 (-)
G147714 NA non-coding upstream 338189 39489370 ~ 39490191 (-)
LOC103036465 NA other downstream 25277 39117267 ~ 39123815 (-)
LOC103036951 ponzr4,LOC108434830,LOC107659705,LOC107750795,LOC107667736,LOC107753979 other downstream 35476 39111148 ~ 39113616 (-)
G147652 ponzr4,LOC103036765,LOC107753991,LOC107572567,LOC107572169,LOC107659716,LOC108434828,LOC108267307 other downstream 44178 39100098 ~ 39104914 (-)
LOC103038564 fxr2,LOC108434865,LOC108267464,LOC107750766,LOC107753958 other downstream 88033 39041593 ~ 39061059 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other downstream 131460 39014002 ~ 39017632 (-)
fgf11 fgf11,fgf11a,LOC107664286,LOC107753963,LOC107750771,LOC107659728 other upstream 114168 39265349 ~ 39398012 (-)
tmem256 tmem256,LOC107564775,LOC107659713,LOC107560291 other upstream 339380 39490561 ~ 39498234 (-)
ufsp1 NA other upstream 664726 39815907 ~ 39817763 (-)
G147828 NA other upstream 669570 39820751 ~ 39821575 (-)

Expression


Co-expression Network